------------------------------------------------------------------------------------------------------------------------- Will print the top 5 alignments (based on backbone shifts) for each pairing of chains, as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: score1 [score2] pairings L2ERR {Xbad/Xsig:Xtot} Breaks (score2 is the score from protein2's perspective, not the minimum of the two perspectives as in some earlier printouts.) Recall that "SIMILARITY" refers to similarities over all alignments not just the top ones. ------------------------------------------------------------------------------------------------------------------------- [981, 651]: Comparing 1dz4_A and 1cpt, based on their crossing files. There are 36 (22 H + 14 S) secondary structure elements in 1dz4_A, of which 26 satisfy the size requirements. There are 31 (19 H + 12 S) secondary structure elements in 1cpt, of which 27 satisfy the size requirements. 1.22896 [ 1.25814] ((3 . 3) (4 . 4) (6 . 5) (7 . 6) (9 . 8) (10 . 10) (11 . 11) (12 . 12) (13 . 13) (14 . 14) (15 . 15) (16 . 16) (17 . 17) (18 . 18) (22 . 19) (23 . 20) (24 . 21) (25 . 22) (26 . 23) (27 . 24) (28 . 25) (29 . 26) (31 . 27) (35 . 31)) 4.419 {22/226:276} B:0 1.25429 [ 1.28180] ((3 . 3) (4 . 4) (6 . 5) (7 . 6) (9 . 8) (10 . 10) (11 . 11) (12 . 12) (13 . 13) (14 . 14) (15 . 15) (16 . 16) (17 . 17) (18 . 18) (21 . 19) (23 . 20) (24 . 21) (25 . 22) (26 . 23) (27 . 24) (28 . 25) (29 . 26) (31 . 27) (35 . 31)) 4.415 {23/225:276} B:0 2.60011 [ 2.70010] ((3 . 3) (4 . 4) (6 . 5) (7 . 6) (15 . 14) (18 . 18) (23 . 20) (24 . 21) (29 . 26) (31 . 27)) 4.710 {0/40:45} B:0 2.88927 [ 3.00034] ((3 . 3) (4 . 4) (6 . 5) (7 . 6) (15 . 14) (22 . 19) (23 . 20) (24 . 21) (31 . 27)) 6.989 {0/32:36} B:0 3.71448 [ 3.85732] ((3 . 3) (4 . 4) (6 . 5) (7 . 6) (12 . 11) (22 . 19) (31 . 27)) 7.142 {0/19:21} B:0 SIMILARITY (1/min{score1}): 0.8137 [and 1/min{score2}: 0.7948] [981, 981]: Comparing 1dz4_A and 1dz4_A, based on their crossing files. There are 36 (22 H + 14 S) secondary structure elements in 1dz4_A, of which 26 satisfy the size requirements. There are 36 (22 H + 14 S) secondary structure elements in 1dz4_A, of which 26 satisfy the size requirements. 1.00000 [ 1.00000] ((2 . 2) (3 . 3) (4 . 4) (6 . 6) (7 . 7) (9 . 9) (10 . 10) (11 . 11) (12 . 12) (13 . 13) (14 . 14) (15 . 15) (16 . 16) (17 . 17) (18 . 18) (21 . 21) (22 . 22) (23 . 23) (24 . 24) (25 . 25) (26 . 26) (27 . 27) (28 . 28) (29 . 29) (31 . 31) (35 . 35)) 0.000 {0/280:325} B:0 3.25031 [ 3.25031] ((7 . 7) (13 . 13) (15 . 14) (17 . 17) (26 . 26) (29 . 29) (31 . 31) (35 . 35)) 4.590 {1/23:28} B:0 3.71479 [ 3.71479] ((7 . 7) (13 . 13) (14 . 15) (17 . 17) (29 . 29) (31 . 31) (35 . 35)) 4.904 {1/18:21} B:0 3.71495 [ 3.71495] ((11 . 10) (13 . 13) (17 . 17) (18 . 18) (29 . 29) (31 . 31) (35 . 35)) 5.645 {1/17:21} B:0 4.33347 [ 4.33347] ((11 . 12) (13 . 13) (17 . 17) (29 . 29) (31 . 31) (35 . 35)) 7.321 {0/13:15} B:0 SIMILARITY (1/min{score1}): 1.0000 [and 1/min{score2}: 1.0000] [981, 1268]: Comparing 1dz4_A and 1eup_A, based on their crossing files. There are 36 (22 H + 14 S) secondary structure elements in 1dz4_A, of which 26 satisfy the size requirements. There are 31 (21 H + 10 S) secondary structure elements in 1eup_A, of which 24 satisfy the size requirements. 1.14769 [ 1.06524] ((3 . 2) (4 . 3) (6 . 4) (7 . 5) (10 . 10) (11 . 11) (12 . 12) (13 . 13) (14 . 14) (15 . 15) (16 . 16) (17 . 17) (18 . 18) (22 . 19) (23 . 20) (24 . 21) (25 . 22) (26 . 23) (27 . 24) (28 . 25) (29 . 26) (31 . 28) (35 . 31)) 4.250 {12/215:253} B:0 1.15395 [ 1.07304] ((3 . 2) (4 . 3) (6 . 4) (7 . 5) (10 . 10) (11 . 11) (12 . 12) (13 . 13) (14 . 14) (15 . 15) (16 . 16) (17 . 17) (18 . 18) (21 . 19) (23 . 20) (24 . 21) (25 . 22) (26 . 23) (27 . 24) (28 . 25) (29 . 26) (31 . 28) (35 . 31)) 4.016 {13/214:253} B:0 2.60013 [ 2.40016] ((3 . 2) (4 . 3) (6 . 4) (7 . 5) (12 . 12) (15 . 14) (23 . 20) (24 . 21) (29 . 26) (31 . 28)) 4.923 {0/43:45} B:0 2.88931 [ 2.66721] ((3 . 2) (4 . 3) (6 . 4) (7 . 5) (15 . 14) (22 . 19) (23 . 20) (24 . 21) (31 . 28)) 7.199 {0/33:36} B:0 3.25146 [ 3.00186] ((3 . 2) (4 . 3) (6 . 4) (7 . 5) (12 . 11) (15 . 14) (22 . 19) (31 . 28)) 10.716 {0/23:28} B:0 SIMILARITY (1/min{score1}): 0.8713 [and 1/min{score2}: 0.9388] [981, 2092]: Comparing 1dz4_A and 1h5z_A, based on their crossing files. There are 36 (22 H + 14 S) secondary structure elements in 1dz4_A, of which 26 satisfy the size requirements. There are 34 (22 H + 12 S) secondary structure elements in 1h5z_A, of which 27 satisfy the size requirements. 1.30492 [ 1.34602] ((3 . 2) (4 . 3) (6 . 4) (7 . 5) (12 . 8) (13 . 9) (15 . 10) (16 . 12) (17 . 14) (18 . 15) (21 . 16) (22 . 17) (23 . 18) (24 . 20) (25 . 21) (26 . 22) (27 . 23) (28 . 24) (29 . 25) (31 . 29) (35 . 34)) 5.075 {15/175:210} B:0 1.33372 [ 1.36603] ((3 . 2) (4 . 3) (6 . 4) (7 . 5) (9 . 7) (12 . 8) (13 . 9) (15 . 10) (16 . 12) (17 . 14) (18 . 15) (21 . 16) (22 . 17) (23 . 18) (24 . 20) (25 . 21) (26 . 22) (27 . 23) (28 . 24) (29 . 25) (31 . 29) (35 . 34)) 5.206 {20/191:231} B:0 1.33505 [ 1.38147] ((3 . 2) (4 . 3) (6 . 4) (7 . 5) (12 . 8) (13 . 9) (14 . 10) (16 . 12) (17 . 14) (21 . 16) (22 . 17) (23 . 18) (24 . 20) (25 . 21) (26 . 22) (27 . 23) (28 . 24) (29 . 25) (31 . 29) (35 . 34)) 5.305 {12/161:190} B:0 1.33560 [ 1.38196] ((3 . 2) (4 . 3) (6 . 4) (7 . 5) (12 . 8) (13 . 9) (15 . 10) (16 . 12) (17 . 14) (21 . 16) (22 . 17) (23 . 18) (24 . 20) (25 . 21) (26 . 22) (27 . 23) (28 . 24) (29 . 25) (31 . 29) (35 . 34)) 4.996 {12/160:190} B:0 1.33860 [ 1.38468] ((2 . 1) (3 . 2) (4 . 3) (6 . 4) (7 . 5) (12 . 8) (13 . 9) (14 . 10) (16 . 12) (21 . 16) (22 . 17) (23 . 18) (24 . 20) (25 . 21) (26 . 22) (27 . 23) (28 . 24) (29 . 25) (31 . 29) (35 . 34)) 5.441 {12/157:190} B:0 SIMILARITY (1/min{score1}): 0.7663 [and 1/min{score2}: 0.7429] [981, 2549]: Comparing 1dz4_A and 1io7_A, based on their crossing files. There are 36 (22 H + 14 S) secondary structure elements in 1dz4_A, of which 26 satisfy the size requirements. There are 29 (19 H + 10 S) secondary structure elements in 1io7_A, of which 24 satisfy the size requirements. 2.88892 [ 2.66670] ((7 . 4) (12 . 10) (14 . 12) (21 . 17) (22 . 18) (24 . 20) (29 . 25) (31 . 27) (35 . 29)) 3.700 {0/30:36} B:0 3.71503 [ 3.42951] ((7 . 4) (12 . 10) (15 . 12) (21 . 17) (29 . 25) (31 . 27) (35 . 29)) 6.783 {1/17:21} B:0 3.71916 [ 3.43477] ((10 . 9) (15 . 13) (16 . 14) (17 . 15) (29 . 25) (31 . 27) (35 . 29)) 3.287 {2/20:21} B:0 3.72176 [ 3.43806] ((3 . 1) (7 . 4) (15 . 12) (26 . 22) (29 . 25) (31 . 27) (35 . 29)) 5.339 {2/18:21} B:0 5.20046 [ 4.80059] ((3 . 4) (9 . 9) (11 . 12) (15 . 14) (18 . 18)) 11.434 {0/6:10} B:0 SIMILARITY (1/min{score1}): 0.5718 [and 1/min{score2}: 0.5789] [981, 2681]: Comparing 1dz4_A and 1izo_A, based on their crossing files. There are 36 (22 H + 14 S) secondary structure elements in 1dz4_A, of which 26 satisfy the size requirements. There are 27 (17 H + 10 S) secondary structure elements in 1izo_A, of which 25 satisfy the size requirements. 1.26808 [ 1.22400] ((3 . 2) (4 . 3) (6 . 4) (7 . 5) (10 . 9) (12 . 10) (13 . 11) (15 . 12) (16 . 13) (17 . 14) (18 . 15) (22 . 16) (23 . 17) (24 . 18) (25 . 19) (26 . 20) (27 . 21) (28 . 22) (29 . 23) (31 . 25) (35 . 27)) 5.033 {12/174:210} B:0 1.27011 [ 1.23404] ((3 . 2) (4 . 3) (6 . 4) (7 . 5) (9 . 7) (10 . 9) (12 . 10) (13 . 11) (15 . 12) (16 . 13) (17 . 14) (18 . 15) (21 . 16) (23 . 17) (24 . 18) (25 . 19) (26 . 20) (27 . 21) (28 . 22) (29 . 23) (31 . 25) (35 . 27)) 5.144 {17/190:231} B:0 1.27829 [ 1.23534] ((3 . 2) (4 . 3) (6 . 4) (7 . 5) (9 . 7) (10 . 9) (12 . 10) (13 . 11) (15 . 12) (16 . 13) (17 . 14) (18 . 15) (21 . 16) (23 . 17) (24 . 18) (25 . 19) (26 . 20) (27 . 21) (28 . 22) (29 . 23) (31 . 25)) 4.891 {13/174:210} B:0 1.36976 [ 1.31729] ((3 . 2) (4 . 3) (6 . 4) (7 . 5) (10 . 9) (12 . 10) (15 . 12) (16 . 13) (17 . 14) (18 . 15) (21 . 16) (23 . 17) (24 . 18) (25 . 19) (26 . 20) (27 . 21) (28 . 22) (29 . 23) (31 . 25)) 4.795 {4/146:171} B:0 6.50006 [ 6.25006] ((2 . 5) (7 . 9) (11 . 12) (15 . 13)) 7.949 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.7886 [and 1/min{score2}: 0.8170] [981, 2848]: Comparing 1dz4_A and 1jfb_A, based on their crossing files. There are 36 (22 H + 14 S) secondary structure elements in 1dz4_A, of which 26 satisfy the size requirements. There are 31 (19 H + 12 S) secondary structure elements in 1jfb_A, of which 24 satisfy the size requirements. 1.22074 [ 1.13955] ((3 . 1) (4 . 2) (6 . 3) (7 . 4) (9 . 6) (10 . 8) (12 . 10) (14 . 12) (15 . 13) (16 . 14) (17 . 15) (18 . 16) (22 . 17) (23 . 18) (24 . 19) (25 . 20) (26 . 21) (27 . 22) (28 . 23) (29 . 24) (31 . 26) (35 . 31)) 5.016 {14/196:231} B:0 2.88941 [ 2.66733] ((4 . 2) (6 . 3) (7 . 4) (12 . 10) (15 . 12) (22 . 17) (23 . 18) (24 . 19) (31 . 26)) 7.591 {0/33:36} B:0 3.91562 [ 3.78161] ((7 . 4) (10 . 9) (11 . 10) (15 . 12) (18 . 13) (21 . 17) (24 . 18) (31 . 26)) 7.571 {6/18:28} B:0 4.33372 [ 4.00049] ((3 . 1) (7 . 4) (12 . 10) (15 . 12) (22 . 17) (31 . 26)) 9.538 {0/12:15} B:0 5.20022 [ 4.80028] ((3 . 4) (9 . 8) (11 . 12) (15 . 14) (23 . 19)) 9.489 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.8192 [and 1/min{score2}: 0.8775] [981, 3014]: Comparing 1dz4_A and 1jpz_A, based on their crossing files. There are 36 (22 H + 14 S) secondary structure elements in 1dz4_A, of which 26 satisfy the size requirements. There are 35 (23 H + 12 S) secondary structure elements in 1jpz_A, of which 27 satisfy the size requirements. 1.34452 [ 1.37608] ((3 . 3) (4 . 4) (6 . 5) (7 . 6) (9 . 8) (10 . 9) (12 . 10) (15 . 12) (16 . 14) (17 . 15) (18 . 16) (21 . 17) (22 . 18) (23 . 19) (24 . 21) (25 . 22) (26 . 23) (27 . 24) (28 . 25) (29 . 26) (31 . 31) (35 . 35)) 4.882 {20/187:231} B:0 1.35397 [ 1.39099] ((3 . 3) (4 . 4) (6 . 5) (7 . 6) (10 . 9) (12 . 10) (14 . 12) (16 . 14) (17 . 15) (18 . 16) (21 . 17) (22 . 18) (23 . 19) (24 . 21) (25 . 22) (26 . 23) (27 . 24) (28 . 25) (29 . 26) (31 . 31) (35 . 35)) 5.187 {17/170:210} B:0 1.44553 [ 1.47623] ((4 . 4) (6 . 5) (7 . 6) (9 . 8) (10 . 9) (12 . 10) (15 . 12) (16 . 14) (17 . 15) (18 . 16) (21 . 17) (22 . 18) (23 . 19) (24 . 21) (25 . 22) (26 . 23) (27 . 24) (28 . 25) (29 . 26) (31 . 31) (35 . 35)) 4.789 {20/168:210} B:0 1.84604 [ 1.86107] ((3 . 3) (4 . 4) (6 . 5) (7 . 6) (9 . 8) (10 . 9) (12 . 10) (15 . 12) (16 . 14) (17 . 15) (18 . 16) (21 . 17) (22 . 18) (23 . 19) (24 . 21) (25 . 22) (26 . 24) (28 . 25) (29 . 26) (31 . 31) (35 . 35)) 4.926 {30/172:210} B:0 3.25115 [ 3.37603] ((3 . 3) (4 . 4) (6 . 5) (7 . 6) (12 . 10) (15 . 12) (17 . 15) (22 . 17)) 10.088 {0/24:28} B:0 SIMILARITY (1/min{score1}): 0.7438 [and 1/min{score2}: 0.7267] [981, 3617]: Comparing 1dz4_A and 1lfk_A, based on their crossing files. There are 36 (22 H + 14 S) secondary structure elements in 1dz4_A, of which 26 satisfy the size requirements. There are 31 (17 H + 14 S) secondary structure elements in 1lfk_A, of which 25 satisfy the size requirements. 1.21619 [ 1.17475] ((3 . 4) (4 . 5) (6 . 6) (7 . 7) (10 . 10) (12 . 11) (14 . 13) (15 . 14) (16 . 15) (17 . 16) (18 . 17) (21 . 18) (22 . 19) (23 . 20) (24 . 21) (25 . 22) (26 . 23) (27 . 24) (28 . 25) (29 . 26) (31 . 27) (35 . 31)) 3.879 {13/187:231} B:0 1.25430 [ 1.20865] ((4 . 5) (6 . 6) (7 . 7) (10 . 10) (12 . 11) (14 . 13) (15 . 14) (16 . 15) (17 . 16) (18 . 17) (21 . 18) (22 . 19) (23 . 20) (24 . 21) (25 . 22) (26 . 23) (27 . 24) (28 . 25) (29 . 26) (31 . 27) (35 . 31)) 3.706 {10/169:210} B:0 4.34613 [ 4.18105] ((3 . 4) (7 . 7) (14 . 14) (29 . 26) (31 . 27) (35 . 31)) 5.855 {2/14:15} B:0 4.39722 [ 4.23827] ((3 . 4) (7 . 7) (10 . 11) (29 . 26) (31 . 27) (35 . 31)) 10.321 {3/14:15} B:0 5.20274 [ 5.00309] ((7 . 7) (17 . 17) (29 . 26) (31 . 27) (35 . 31)) 6.079 {1/9:10} B:0 SIMILARITY (1/min{score1}): 0.8222 [and 1/min{score2}: 0.8512] [981, 4119]: Comparing 1dz4_A and 1n40_A, based on their crossing files. There are 36 (22 H + 14 S) secondary structure elements in 1dz4_A, of which 26 satisfy the size requirements. There are 29 (19 H + 10 S) secondary structure elements in 1n40_A, of which 22 satisfy the size requirements. 1.33770 [ 1.15992] ((3 . 1) (4 . 2) (6 . 3) (7 . 4) (10 . 9) (12 . 10) (15 . 12) (16 . 13) (17 . 14) (18 . 15) (21 . 17) (23 . 18) (24 . 19) (25 . 20) (26 . 21) (27 . 22) (28 . 23) (29 . 24) (31 . 26) (35 . 29)) 4.197 {12/157:190} B:0 2.60029 [ 2.20048] ((4 . 2) (6 . 3) (7 . 4) (12 . 10) (15 . 12) (16 . 13) (17 . 14) (22 . 17) (29 . 24) (31 . 26)) 5.726 {1/40:45} B:0 6.50010 [ 5.50017] ((7 . 10) (10 . 13) (15 . 15) (29 . 26)) 9.225 {0/4:6} B:0 6.50031 [ 5.50050] ((3 . 13) (10 . 17) (15 . 19) (21 . 26)) 12.176 {0/4:6} B:0 6.50735 [ 5.51211] ((15 . 1) (16 . 4) (17 . 7) (18 . 8)) 12.476 {1/6:6} B:0 SIMILARITY (1/min{score1}): 0.7476 [and 1/min{score2}: 0.8621] [981, 4173]: Comparing 1dz4_A and 1n97_A, based on their crossing files. There are 36 (22 H + 14 S) secondary structure elements in 1dz4_A, of which 26 satisfy the size requirements. There are 32 (20 H + 12 S) secondary structure elements in 1n97_A, of which 27 satisfy the size requirements. 1.23958 [ 1.28704] ((3 . 3) (4 . 4) (6 . 5) (7 . 6) (10 . 9) (11 . 11) (12 . 12) (15 . 14) (16 . 15) (17 . 17) (18 . 18) (21 . 19) (22 . 20) (23 . 21) (24 . 22) (25 . 23) (26 . 24) (27 . 25) (28 . 26) (29 . 27) (31 . 29)) 3.934 {5/169:210} B:0 1.25279 [ 1.29887] ((3 . 3) (4 . 4) (6 . 5) (7 . 6) (9 . 8) (10 . 9) (11 . 11) (12 . 12) (15 . 14) (16 . 15) (17 . 17) (21 . 19) (22 . 20) (23 . 21) (24 . 22) (25 . 23) (26 . 24) (27 . 25) (28 . 26) (29 . 27) (31 . 29)) 4.138 {10/174:210} B:0 1.36974 [ 1.42223] ((3 . 3) (4 . 4) (6 . 5) (7 . 6) (10 . 9) (11 . 12) (15 . 14) (16 . 15) (17 . 17) (21 . 19) (22 . 20) (23 . 21) (24 . 22) (25 . 23) (26 . 24) (27 . 25) (28 . 26) (29 . 27) (31 . 29)) 4.601 {4/140:171} B:0 1.45926 [ 1.51326] ((6 . 5) (7 . 6) (9 . 8) (10 . 9) (11 . 12) (15 . 14) (16 . 15) (17 . 17) (21 . 19) (22 . 20) (23 . 21) (24 . 22) (25 . 23) (26 . 24) (27 . 25) (28 . 26) (29 . 27) (31 . 29)) 4.798 {8/124:153} B:0 1.47416 [ 1.51686] ((3 . 3) (4 . 4) (6 . 5) (7 . 6) (10 . 9) (12 . 12) (15 . 14) (16 . 15) (17 . 17) (18 . 19) (22 . 20) (23 . 21) (24 . 22) (25 . 23) (26 . 24) (27 . 25) (28 . 26) (29 . 27) (31 . 29)) 4.329 {15/143:171} B:0 SIMILARITY (1/min{score1}): 0.8067 [and 1/min{score2}: 0.7770] [981, 4607]: Comparing 1dz4_A and 1odo_A, based on their crossing files. There are 36 (22 H + 14 S) secondary structure elements in 1dz4_A, of which 26 satisfy the size requirements. There are 31 (20 H + 11 S) secondary structure elements in 1odo_A, of which 22 satisfy the size requirements. 1.34398 [ 1.20630] ((3 . 2) (4 . 3) (6 . 4) (7 . 5) (9 . 9) (10 . 11) (12 . 13) (14 . 15) (15 . 16) (16 . 17) (17 . 18) (18 . 19) (21 . 20) (22 . 21) (23 . 22) (24 . 23) (25 . 24) (28 . 27) (29 . 28) (31 . 29) (35 . 31)) 3.285 {17/174:210} B:0 2.16704 [ 1.83395] ((3 . 2) (4 . 3) (6 . 4) (7 . 5) (10 . 11) (12 . 13) (15 . 15) (17 . 18) (18 . 19) (28 . 27) (29 . 28) (31 . 29)) 5.627 {0/57:66} B:0 3.25138 [ 2.75228] ((3 . 2) (4 . 3) (6 . 4) (7 . 5) (12 . 13) (15 . 15) (22 . 20) (31 . 29)) 10.559 {0/24:28} B:0 4.33344 [ 3.66684] ((3 . 2) (7 . 5) (12 . 13) (15 . 15) (23 . 22) (31 . 29)) 6.886 {0/14:15} B:0 5.40688 [ 4.72468] ((2 . 8) (3 . 9) (17 . 21) (18 . 22) (21 . 23)) 6.704 {3/9:10} B:0 SIMILARITY (1/min{score1}): 0.7441 [and 1/min{score2}: 0.8290] [981, 5066]: Comparing 1dz4_A and 1po5_A, based on their crossing files. There are 36 (22 H + 14 S) secondary structure elements in 1dz4_A, of which 26 satisfy the size requirements. There are 29 (20 H + 9 S) secondary structure elements in 1po5_A, of which 23 satisfy the size requirements. 1.45040 [ 1.28635] ((3 . 2) (4 . 3) (6 . 4) (7 . 5) (10 . 8) (12 . 9) (15 . 10) (16 . 11) (17 . 14) (18 . 15) (21 . 16) (23 . 17) (24 . 19) (26 . 21) (27 . 22) (28 . 23) (29 . 24) (31 . 26)) 6.561 {6/131:153} B:0 1.45055 [ 1.28656] ((3 . 2) (4 . 3) (6 . 4) (7 . 5) (10 . 8) (12 . 9) (15 . 10) (16 . 11) (17 . 14) (18 . 15) (22 . 16) (23 . 17) (24 . 19) (26 . 21) (27 . 22) (28 . 23) (29 . 24) (31 . 26)) 6.735 {6/132:153} B:0 1.53620 [ 1.36270] ((3 . 2) (4 . 3) (6 . 4) (7 . 5) (10 . 8) (12 . 9) (15 . 10) (16 . 11) (18 . 15) (22 . 16) (23 . 17) (24 . 19) (26 . 21) (27 . 22) (28 . 23) (29 . 24) (31 . 26)) 6.435 {6/116:136} B:0 1.62985 [ 1.44449] ((3 . 2) (4 . 3) (6 . 4) (7 . 5) (10 . 8) (12 . 9) (15 . 10) (16 . 11) (18 . 15) (22 . 16) (23 . 17) (24 . 19) (27 . 22) (28 . 23) (29 . 24) (31 . 26)) 6.553 {5/103:120} B:0 5.40693 [ 4.88887] ((7 . 5) (12 . 9) (15 . 10) (16 . 11) (18 . 14)) 7.902 {3/9:10} B:0 SIMILARITY (1/min{score1}): 0.6902 [and 1/min{score2}: 0.7774] [981, 5212]: Comparing 1dz4_A and 1q5d_A, based on their crossing files. There are 36 (22 H + 14 S) secondary structure elements in 1dz4_A, of which 26 satisfy the size requirements. There are 31 (19 H + 12 S) secondary structure elements in 1q5d_A, of which 25 satisfy the size requirements. 1.18936 [ 1.14483] ((3 . 1) (4 . 2) (6 . 3) (7 . 4) (10 . 9) (12 . 10) (14 . 12) (15 . 13) (16 . 14) (17 . 15) (18 . 16) (21 . 17) (22 . 18) (23 . 19) (24 . 20) (25 . 21) (26 . 22) (27 . 23) (28 . 24) (29 . 25) (31 . 27) (35 . 31)) 2.832 {9/191:231} B:0 1.26074 [ 1.21583] ((3 . 1) (4 . 2) (6 . 3) (7 . 4) (11 . 9) (12 . 10) (14 . 12) (15 . 13) (16 . 14) (18 . 16) (21 . 17) (22 . 18) (23 . 19) (24 . 20) (25 . 21) (26 . 22) (27 . 23) (28 . 24) (29 . 25) (31 . 27) (35 . 31)) 4.340 {11/171:210} B:0 2.88904 [ 2.77794] ((4 . 2) (6 . 3) (7 . 4) (10 . 9) (12 . 10) (14 . 13) (16 . 14) (17 . 15) (31 . 27)) 5.529 {0/33:36} B:0 3.71475 [ 3.57195] ((3 . 1) (4 . 2) (6 . 3) (7 . 4) (12 . 10) (22 . 17) (31 . 27)) 8.881 {0/19:21} B:0 6.50007 [ 6.25008] ((10 . 12) (11 . 13) (18 . 18) (25 . 24)) 8.332 {0/1:6} B:0 SIMILARITY (1/min{score1}): 0.8408 [and 1/min{score2}: 0.8735] -------------------------------------------------------------------------------------------------------------------------