------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 656 1cqx_A) ( 56 1a6m ) 0.9997 0.8748 3.0938 ( 0 19 21) 0 0.9997 0.8748 7 8 ( 656 1cqx_A) ( 147 1all_A) 0.8496 0.7461 8.1307 ( 0 11 15) 0 0.8496 0.7461 7 8 ( 656 1cqx_A) ( 148 1all_B) 0.8504 0.7465 7.8902 ( 0 12 15) 0 0.8504 0.7465 7 8 ( 656 1cqx_A) ( 197 1ash ) 0.9979 0.8739 4.8325 ( 0 18 21) 0 0.9979 0.8739 7 8 ( 656 1cqx_A) ( 259 1b0b ) 0.9992 0.9992 3.7647 ( 0 19 21) 0 0.9992 0.9992 7 7 ( 656 1cqx_A) ( 317 1b8d_A) 0.7892 0.6447 7.2707 ( 1 11 15) 0 0.7892 0.6447 7 9 ( 656 1cqx_A) ( 586 1cg5_B) 0.9990 0.8745 4.0434 ( 0 19 21) 0 0.9990 0.8745 7 8 ( 656 1cqx_A) ( 656 1cqx_A) 1.0000 1.0000 0.0000 ( 0 19 21) 0 1.0000 1.0000 7 7 ( 656 1cqx_A) ( 876 1dlw_A) 0.9660 0.9660 7.6837 ( 1 18 21) 0 0.9660 0.9660 7 7 ( 656 1cqx_A) ( 877 1dly_A) 0.8540 0.8540 6.5233 ( 0 13 15) 0 0.8540 0.8540 7 7 ( 656 1cqx_A) ( 1098 1eca ) 0.9987 0.8743 4.2759 ( 0 19 21) 0 0.9987 0.8743 7 8 ( 656 1cqx_A) ( 1282 1ew6_A) 0.9763 0.8625 4.3783 ( 1 18 21) 0 0.9763 0.8625 7 8 ( 656 1cqx_A) ( 1503 1fhj_B) 0.9987 0.8743 4.3207 ( 0 19 21) 0 0.9987 0.8743 7 8 ( 656 1cqx_A) ( 1795 1gcv_A) 0.9983 0.8741 4.5851 ( 0 19 21) 0 0.9983 0.8741 7 8 ( 656 1cqx_A) ( 1796 1gcv_B) 0.9992 0.9992 3.7867 ( 0 19 21) 0 0.9992 0.9992 7 7 ( 656 1cqx_A) ( 2126 1h7w_A) 0.2945 0.2909 8.9769 ( 2 6 6) 0 0.2945 0.2909 7 8 ( 656 1cqx_A) ( 2142 1h97_A) 0.9759 0.7706 4.6747 ( 1 18 21) 0 0.9759 0.7706 7 9 ( 656 1cqx_A) ( 2233 1hlb ) 0.8559 0.8559 5.1377 ( 0 13 15) 0 0.8559 0.8559 7 7 ( 656 1cqx_A) ( 2465 1idr_A) 0.8545 0.8545 6.2503 ( 0 13 15) 0 0.8545 0.8545 7 7 ( 656 1cqx_A) ( 2580 1ird_A) 0.9964 0.8731 5.5597 ( 0 18 21) 0 0.9964 0.8731 7 8 ( 656 1cqx_A) ( 2597 1it2_A) 0.9767 0.9767 3.9771 ( 1 18 21) 0 0.9767 0.9767 7 7 ( 656 1cqx_A) ( 2598 1ith_A) 0.9764 0.6958 6.2679 ( 1 19 21) 0 0.9764 0.6958 7 10 ( 656 1cqx_A) ( 2815 1jbo_A) 0.7612 0.6788 8.0010 ( 2 17 21) 0 0.7612 0.6788 7 9 ( 656 1cqx_A) ( 2816 1jbo_B) 0.7897 0.6449 6.9456 ( 1 11 15) 0 0.7897 0.6449 7 9 ( 656 1cqx_A) ( 2956 1jl7_A) 0.9767 0.9767 3.9057 ( 1 18 21) 0 0.9767 0.9767 7 7 ( 656 1cqx_A) ( 3283 1kf6_B) 0.7127 0.6242 6.9155 ( 0 7 10) 0 0.7127 0.6242 7 8 ( 656 1cqx_A) ( 3406 1kr7_A) 0.8560 0.8560 5.0392 ( 0 14 15) 0 0.8560 0.8560 7 7 ( 656 1cqx_A) ( 3899 1mba ) 0.9995 0.8747 3.4514 ( 0 18 21) 0 0.9995 0.8747 7 8 ( 656 1cqx_A) ( 4216 1nek_B) 0.8519 0.8519 7.4084 ( 0 11 15) 0 0.8519 0.8519 7 7 ( 656 1cqx_A) ( 4241 1ngk_A) 0.8539 0.7484 6.5407 ( 0 12 15) 0 0.8539 0.7484 7 8 ( 656 1cqx_A) ( 4675 1oj6_A) 0.9991 0.8746 3.8951 ( 0 18 21) 0 0.9991 0.8746 7 8 ( 656 1cqx_A) ( 4759 1or4_A) 0.9954 0.8726 5.9031 ( 0 18 21) 0 0.9954 0.8726 7 8 ( 656 1cqx_A) ( 5374 1qla_B) 0.8534 0.7480 6.8263 ( 0 11 15) 0 0.8534 0.7480 7 8 ( 656 1cqx_A) ( 6457 2gdm ) 0.9809 0.9809 3.8464 ( 1 19 21) 0 0.9809 0.9809 7 7 ( 656 1cqx_A) ( 6595 3sdh_A) 0.9985 0.7773 4.4858 ( 0 18 21) 0 0.9985 0.7773 7 9 -------------------------------------------------------------------------------------------------------------------------