------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 586 1cg5_B) ( 56 1a6m ) 0.8750 0.8750 2.1457 ( 0 19 21) 0 0.8750 0.8750 8 8 ( 586 1cg5_B) ( 147 1all_A) 0.7490 0.7490 5.8023 ( 0 12 15) 0 0.7490 0.7490 8 8 ( 586 1cg5_B) ( 148 1all_B) 0.7492 0.7492 5.4615 ( 0 13 15) 0 0.7492 0.7492 8 8 ( 586 1cg5_B) ( 197 1ash ) 0.8749 0.8749 2.8805 ( 0 18 21) 0 0.8749 0.8749 8 8 ( 586 1cg5_B) ( 259 1b0b ) 0.8749 0.9998 2.7575 ( 0 19 21) 0 0.8749 0.9998 8 7 ( 586 1cg5_B) ( 317 1b8d_A) 0.7138 0.6457 4.7424 ( 1 11 15) 0 0.7138 0.6457 8 9 ( 586 1cg5_B) ( 586 1cg5_B) 1.0000 1.0000 0.0000 ( 0 27 28) 0 1.0000 1.0000 8 8 ( 586 1cg5_B) ( 656 1cqx_A) 0.8745 0.9990 4.0434 ( 0 19 21) 0 0.8745 0.9990 8 7 ( 586 1cg5_B) ( 876 1dlw_A) 0.7635 0.8177 4.9846 ( 2 19 21) 0 0.7635 0.8563 8 7 ( 586 1cg5_B) ( 877 1dly_A) 0.7496 0.8564 4.5821 ( 0 13 15) 0 0.7496 0.8564 8 7 ( 586 1cg5_B) ( 1098 1eca ) 0.8750 0.8750 2.2275 ( 0 19 21) 0 0.8750 0.8750 8 8 ( 586 1cg5_B) ( 1282 1ew6_A) 0.8628 0.8628 3.9293 ( 1 18 21) 0 0.8628 0.8628 8 8 ( 586 1cg5_B) ( 1503 1fhj_B) 0.8749 0.8749 2.4352 ( 0 20 21) 0 0.8749 0.8749 8 8 ( 586 1cg5_B) ( 1795 1gcv_A) 0.8750 0.8750 2.0145 ( 0 19 21) 0 0.8750 0.8750 8 8 ( 586 1cg5_B) ( 1796 1gcv_B) 0.8750 0.9999 1.4942 ( 0 20 21) 0 0.8750 0.9999 8 7 ( 586 1cg5_B) ( 2126 1h7w_A) 0.7290 0.7290 6.6853 ( 1 13 15) 0 0.7290 0.7290 8 8 ( 586 1cg5_B) ( 2142 1h97_A) 0.9175 0.8396 3.0240 ( 2 25 28) 0 0.9175 0.8396 8 9 ( 586 1cg5_B) ( 2233 1hlb ) 0.7500 0.8571 2.4118 ( 0 14 15) 0 0.7500 0.8571 8 7 ( 586 1cg5_B) ( 2465 1idr_A) 0.7498 0.8568 3.6982 ( 0 13 15) 0 0.7498 0.8568 8 7 ( 586 1cg5_B) ( 2580 1ird_A) 0.8749 0.8749 2.6171 ( 0 19 21) 0 0.8749 0.8749 8 8 ( 586 1cg5_B) ( 2597 1it2_A) 0.8653 0.9815 2.6861 ( 1 19 21) 0 0.8653 0.9815 8 7 ( 586 1cg5_B) ( 2598 1ith_A) 0.8669 0.6973 3.6009 ( 1 20 21) 0 0.8669 0.6973 8 10 ( 586 1cg5_B) ( 2815 1jbo_A) 0.8725 0.7764 6.0083 ( 0 19 21) 0 0.8725 0.7764 8 9 ( 586 1cg5_B) ( 2816 1jbo_B) 0.7139 0.6457 4.6293 ( 1 11 15) 0 0.7139 0.6457 8 9 ( 586 1cg5_B) ( 2956 1jl7_A) 0.8654 0.9816 2.2553 ( 1 19 21) 0 0.8654 0.9816 8 7 ( 586 1cg5_B) ( 3283 1kf6_B) 0.7480 0.7480 6.8903 ( 0 12 15) 0 0.7480 0.7480 8 8 ( 586 1cg5_B) ( 3406 1kr7_A) 0.7499 0.8569 3.4162 ( 0 14 15) 0 0.7499 0.8569 8 7 ( 586 1cg5_B) ( 3899 1mba ) 0.8749 0.8749 2.6421 ( 0 18 21) 0 0.8749 0.8749 8 8 ( 586 1cg5_B) ( 4216 1nek_B) 0.4997 0.5709 7.0675 ( 0 4 6) 0 0.4998 0.5711 8 7 ( 586 1cg5_B) ( 4241 1ngk_A) 0.7498 0.7498 4.0000 ( 0 12 15) 0 0.7498 0.7498 8 8 ( 586 1cg5_B) ( 4675 1oj6_A) 0.8750 0.8750 1.9520 ( 0 18 21) 0 0.8750 0.8750 8 8 ( 586 1cg5_B) ( 4759 1or4_A) 0.8745 0.8745 3.9434 ( 0 19 21) 0 0.8745 0.8745 8 8 ( 586 1cg5_B) ( 5374 1qla_B) 0.4983 0.4983 10.8971 ( 0 5 6) 0 0.4983 0.4983 8 8 ( 586 1cg5_B) ( 6457 2gdm ) 0.8652 0.9813 3.3428 ( 1 19 21) 0 0.8652 0.9813 8 7 ( 586 1cg5_B) ( 6595 3sdh_A) 0.8749 0.7777 2.2978 ( 0 19 21) 0 0.8749 0.7777 8 9 -------------------------------------------------------------------------------------------------------------------------