------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 2816 1jbo_B) ( 56 1a6m ) 0.6456 0.7138 4.9613 ( 1 11 15) 0 0.6456 0.7138 9 8 ( 2816 1jbo_B) ( 147 1all_A) 0.8882 0.9988 4.2033 ( 0 23 28) 0 0.8882 0.9988 9 8 ( 2816 1jbo_B) ( 148 1all_B) 0.8884 0.9990 3.9902 ( 0 24 28) 0 0.8884 0.9990 9 8 ( 2816 1jbo_B) ( 197 1ash ) 0.6455 0.7136 5.4994 ( 1 11 15) 0 0.6455 0.7136 9 8 ( 2816 1jbo_B) ( 259 1b0b ) 0.6456 0.7916 5.2122 ( 1 11 15) 0 0.6456 0.7916 9 7 ( 2816 1jbo_B) ( 317 1b8d_A) 0.8262 0.8262 2.5068 ( 3 29 36) 0 0.8262 0.8262 9 9 ( 2816 1jbo_B) ( 586 1cg5_B) 0.6457 0.7139 4.6293 ( 1 11 15) 0 0.6457 0.7139 9 8 ( 2816 1jbo_B) ( 656 1cqx_A) 0.6449 0.7897 6.9456 ( 1 11 15) 0 0.6449 0.7897 9 7 ( 2816 1jbo_B) ( 876 1dlw_A) 0.5555 0.7139 4.7069 ( 0 7 10) 0 0.5555 0.7139 9 7 ( 2816 1jbo_B) ( 877 1dly_A) 0.5555 0.7139 4.6991 ( 0 7 10) 0 0.5555 0.7139 9 7 ( 2816 1jbo_B) ( 1098 1eca ) 0.6457 0.7139 4.4087 ( 1 11 15) 0 0.6457 0.7139 9 8 ( 2816 1jbo_B) ( 1282 1ew6_A) 0.6661 0.7491 5.6778 ( 0 11 15) 0 0.6661 0.7491 9 8 ( 2816 1jbo_B) ( 1503 1fhj_B) 0.6455 0.7136 5.3832 ( 1 11 15) 0 0.6455 0.7136 9 8 ( 2816 1jbo_B) ( 1795 1gcv_A) 0.5073 0.5163 3.9814 ( 3 16 21) 0 0.5073 0.5163 9 8 ( 2816 1jbo_B) ( 1796 1gcv_B) 0.6457 0.7920 4.4039 ( 1 11 15) 0 0.6457 0.7920 9 7 ( 2816 1jbo_B) ( 2126 1h7w_A) nil ( 2816 1jbo_B) ( 2142 1h97_A) 0.6454 0.6454 5.9145 ( 1 11 15) 0 0.6454 0.6454 9 9 ( 2816 1jbo_B) ( 2233 1hlb ) 0.6458 0.7922 3.8101 ( 1 11 15) 0 0.6458 0.7922 9 7 ( 2816 1jbo_B) ( 2465 1idr_A) 0.5555 0.7140 4.5517 ( 0 7 10) 0 0.5555 0.7140 9 7 ( 2816 1jbo_B) ( 2580 1ird_A) 0.4806 0.4874 4.5796 ( 3 15 21) 0 0.4835 0.5138 9 8 ( 2816 1jbo_B) ( 2597 1it2_A) 0.6455 0.7914 5.4146 ( 1 11 15) 0 0.6455 0.7914 9 7 ( 2816 1jbo_B) ( 2598 1ith_A) 0.7669 0.6935 4.4663 ( 1 16 21) 0 0.7669 0.6935 9 10 ( 2816 1jbo_B) ( 2815 1jbo_A) 0.8882 0.8882 4.2775 ( 0 23 28) 0 0.8882 0.8882 9 9 ( 2816 1jbo_B) ( 2816 1jbo_B) 1.0000 1.0000 0.0000 ( 0 30 36) 0 1.0000 1.0000 9 9 ( 2816 1jbo_B) ( 2956 1jl7_A) 0.6455 0.7915 5.3853 ( 1 11 15) 0 0.6455 0.7915 9 7 ( 2816 1jbo_B) ( 3283 1kf6_B) 0.4442 0.4996 7.7194 ( 0 2 6) 0 0.4442 0.4996 9 8 ( 2816 1jbo_B) ( 3406 1kr7_A) 0.5554 0.7139 4.9196 ( 0 8 10) 0 0.5554 0.7139 9 7 ( 2816 1jbo_B) ( 3899 1mba ) 0.6456 0.7137 5.2347 ( 1 11 15) 0 0.6456 0.7137 9 8 ( 2816 1jbo_B) ( 4216 1nek_B) 0.2862 0.2945 6.7112 ( 1 3 6) 0 0.2862 0.2945 9 7 ( 2816 1jbo_B) ( 4241 1ngk_A) 0.6454 0.7133 5.9936 ( 1 11 15) 0 0.6454 0.7133 9 8 ( 2816 1jbo_B) ( 4675 1oj6_A) 0.6458 0.7140 4.2901 ( 1 11 15) 0 0.6458 0.7140 9 8 ( 2816 1jbo_B) ( 4759 1or4_A) 0.6371 0.6999 4.6696 ( 1 10 15) 0 0.6371 0.6999 9 8 ( 2816 1jbo_B) ( 5374 1qla_B) 0.3927 0.4191 12.7274 ( 1 5 6) 0 0.3927 0.4191 9 8 ( 2816 1jbo_B) ( 6457 2gdm ) 0.6458 0.7920 4.3451 ( 1 11 15) 0 0.6458 0.7920 9 7 ( 2816 1jbo_B) ( 6595 3sdh_A) 0.6455 0.6455 5.5717 ( 1 11 15) 0 0.6455 0.6455 9 9 -------------------------------------------------------------------------------------------------------------------------