------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 259 1b0b ) ( 56 1a6m ) 0.9999 0.8750 1.9992 ( 0 19 21) 0 0.9999 0.8750 7 8 ( 259 1b0b ) ( 147 1all_A) 0.8532 0.7480 6.8820 ( 0 11 15) 0 0.8532 0.7480 7 8 ( 259 1b0b ) ( 148 1all_B) 0.8539 0.7483 6.5482 ( 0 12 15) 0 0.8539 0.7483 7 8 ( 259 1b0b ) ( 197 1ash ) 0.9998 0.8749 2.6555 ( 0 18 21) 0 0.9998 0.8749 7 8 ( 259 1b0b ) ( 259 1b0b ) 1.0000 1.0000 0.0000 ( 0 19 21) 0 1.0000 1.0000 7 7 ( 259 1b0b ) ( 317 1b8d_A) 0.7914 0.6455 5.4255 ( 1 11 15) 0 0.7914 0.6455 7 9 ( 259 1b0b ) ( 586 1cg5_B) 0.9998 0.8749 2.7575 ( 0 19 21) 0 0.9998 0.8749 7 8 ( 259 1b0b ) ( 656 1cqx_A) 0.9992 0.9992 3.7647 ( 0 19 21) 0 0.9992 0.9992 7 7 ( 259 1b0b ) ( 876 1dlw_A) 0.9733 0.9733 5.9307 ( 1 18 21) 0 0.9733 0.9733 7 7 ( 259 1b0b ) ( 877 1dly_A) 0.8559 0.8559 5.1504 ( 0 13 15) 0 0.8559 0.8559 7 7 ( 259 1b0b ) ( 1098 1eca ) 0.9998 0.8749 2.5220 ( 0 19 21) 0 0.9998 0.8749 7 8 ( 259 1b0b ) ( 1282 1ew6_A) 0.9773 0.8631 2.8935 ( 1 18 21) 0 0.9773 0.8631 7 8 ( 259 1b0b ) ( 1503 1fhj_B) 0.9997 0.8749 2.9214 ( 0 19 21) 0 0.9997 0.8749 7 8 ( 259 1b0b ) ( 1795 1gcv_A) 0.9997 0.8748 2.9607 ( 0 19 21) 0 0.9997 0.8748 7 8 ( 259 1b0b ) ( 1796 1gcv_B) 0.9998 0.9998 2.8146 ( 0 19 21) 0 0.9998 0.9998 7 7 ( 259 1b0b ) ( 2126 1h7w_A) 0.3786 0.3667 10.9802 ( 1 4 6) 0 0.3786 0.3667 7 8 ( 259 1b0b ) ( 2142 1h97_A) 0.9772 0.7711 2.9825 ( 1 18 21) 0 0.9772 0.7711 7 9 ( 259 1b0b ) ( 2233 1hlb ) 0.8570 0.8570 3.2228 ( 0 13 15) 0 0.8570 0.8570 7 7 ( 259 1b0b ) ( 2465 1idr_A) 0.8564 0.8564 4.5000 ( 0 13 15) 0 0.8564 0.8564 7 7 ( 259 1b0b ) ( 2580 1ird_A) 0.9989 0.8744 4.1535 ( 0 18 21) 0 0.9989 0.8744 7 8 ( 259 1b0b ) ( 2597 1it2_A) 0.9774 0.9774 2.2662 ( 1 18 21) 0 0.9774 0.9774 7 7 ( 259 1b0b ) ( 2598 1ith_A) 0.9801 0.6965 4.6336 ( 1 19 21) 0 0.9801 0.6965 7 10 ( 259 1b0b ) ( 2815 1jbo_A) 0.9924 0.7756 6.7119 ( 0 18 21) 0 0.9924 0.7756 7 9 ( 259 1b0b ) ( 2816 1jbo_B) 0.7916 0.6456 5.2122 ( 1 11 15) 0 0.7916 0.6456 7 9 ( 259 1b0b ) ( 2956 1jl7_A) 0.9774 0.9774 2.4471 ( 1 18 21) 0 0.9774 0.9774 7 7 ( 259 1b0b ) ( 3283 1kf6_B) 0.8539 0.7484 6.5408 ( 0 12 15) 0 0.8539 0.7484 7 8 ( 259 1b0b ) ( 3406 1kr7_A) 0.8570 0.8570 2.7971 ( 0 14 15) 0 0.8570 0.8570 7 7 ( 259 1b0b ) ( 3899 1mba ) 0.9999 0.8750 1.7029 ( 0 18 21) 0 0.9999 0.8750 7 8 ( 259 1b0b ) ( 4216 1nek_B) 0.7131 0.7131 6.3989 ( 0 8 10) 0 0.8054 0.8054 7 7 ( 259 1b0b ) ( 4241 1ngk_A) 0.8561 0.7495 4.9496 ( 0 12 15) 0 0.8561 0.7495 7 8 ( 259 1b0b ) ( 4675 1oj6_A) 0.9999 0.8750 2.0896 ( 0 18 21) 0 0.9999 0.8750 7 8 ( 259 1b0b ) ( 4759 1or4_A) 0.9985 0.8742 4.4867 ( 0 18 21) 0 0.9985 0.8742 7 8 ( 259 1b0b ) ( 5374 1qla_B) 0.5682 0.4983 10.9299 ( 0 5 6) 0 0.5682 0.4983 7 8 ( 259 1b0b ) ( 6457 2gdm ) 0.9812 0.9812 3.4463 ( 1 19 21) 0 0.9812 0.9812 7 7 ( 259 1b0b ) ( 6595 3sdh_A) 0.9999 0.7777 2.3423 ( 0 18 21) 0 0.9999 0.7777 7 9 -------------------------------------------------------------------------------------------------------------------------