------------------------------------------------------------------------------------------------------------------------- Will print the top 5 alignments (based on backbone shifts) for each pairing of chains, as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: score1 [score2] pairings L2ERR {Xbad/Xsig:Xtot} Breaks (score2 is the score from protein2's perspective, not the minimum of the two perspectives as in some earlier printouts.) Recall that "SIMILARITY" refers to similarities over all alignments not just the top ones. ------------------------------------------------------------------------------------------------------------------------- [1796, 56]: Comparing 1gcv_B and 1a6m, based on their crossing files. There are 7 (7 H + 0 S) secondary structure elements in 1gcv_B, of which 7 satisfy the size requirements. There are 9 (9 H + 0 S) secondary structure elements in 1a6m, of which 8 satisfy the size requirements. 1.00009 [ 1.14292] ((1 . 1) (2 . 2) (3 . 3) (4 . 5) (5 . 6) (6 . 7) (7 . 9)) 2.218 {0/19:21} B:0 1.52294 [ 1.68658] ((3 . 4) (4 . 5) (5 . 6) (6 . 7) (7 . 9)) 5.468 {1/9:10} B:0 2.24560 [ 2.37934] ((1 . 1) (2 . 2) (3 . 3) (5 . 5)) 7.570 {1/5:6} B:0 2.25111 [ 2.38398] ((2 . 5) (3 . 6) (4 . 7) (6 . 9)) 11.849 {1/5:6} B:0 5.01887 [ 5.03191] ((3 . 1) (4 . 2) (6 . 5) (7 . 6)) 9.189 {2/4:6} B:0 SIMILARITY (1/min{score1}): 0.9999 [and 1/min{score2}: 0.8750] [1796, 147]: Comparing 1gcv_B and 1all_A, based on their crossing files. There are 7 (7 H + 0 S) secondary structure elements in 1gcv_B, of which 7 satisfy the size requirements. There are 9 (9 H + 0 S) secondary structure elements in 1all_A, of which 8 satisfy the size requirements. 1.16956 [ 1.33527] ((1 . 2) (2 . 3) (4 . 5) (5 . 7) (6 . 8) (7 . 9)) 5.895 {0/12:15} B:0 1.52256 [ 1.68630] ((2 . 3) (4 . 5) (5 . 6) (6 . 8) (7 . 9)) 4.827 {1/9:10} B:0 1.56794 [ 1.64664] ((1 . 2) (2 . 3) (4 . 5) (5 . 6) (6 . 8) (7 . 9)) 6.450 {2/14:15} B:0 2.24801 [ 2.38137] ((1 . 5) (2 . 6) (3 . 7) (4 . 8)) 10.112 {1/5:6} B:0 3.34762 [ 3.35631] ((1 . 2) (2 . 6) (4 . 9) (5 . 8) (6 . 7) (7 . 5)) 11.619 {4/12:15} B:3 SIMILARITY (1/min{score1}): 0.8550 [and 1/min{score2}: 0.7489] [1796, 148]: Comparing 1gcv_B and 1all_B, based on their crossing files. There are 7 (7 H + 0 S) secondary structure elements in 1gcv_B, of which 7 satisfy the size requirements. There are 8 (8 H + 0 S) secondary structure elements in 1all_B, of which 8 satisfy the size requirements. 1.16903 [ 1.33492] ((1 . 2) (2 . 3) (4 . 4) (5 . 6) (6 . 7) (7 . 8)) 5.605 {0/13:15} B:0 1.52266 [ 1.68637] ((2 . 3) (4 . 4) (5 . 5) (6 . 7) (7 . 8)) 5.011 {1/9:10} B:0 1.56774 [ 1.64647] ((1 . 2) (2 . 3) (4 . 4) (5 . 5) (6 . 7) (7 . 8)) 6.253 {2/14:15} B:0 2.25102 [ 2.38391] ((2 . 4) (4 . 5) (5 . 7) (6 . 8)) 11.807 {1/5:6} B:0 2.87805 [ 2.89167] ((2 . 5) (3 . 2) (4 . 6) (5 . 3) (6 . 8) (7 . 7)) 9.402 {4/14:15} B:3 SIMILARITY (1/min{score1}): 0.8554 [and 1/min{score2}: 0.7491] [1796, 197]: Comparing 1gcv_B and 1ash, based on their crossing files. There are 7 (7 H + 0 S) secondary structure elements in 1gcv_B, of which 7 satisfy the size requirements. There are 8 (8 H + 0 S) secondary structure elements in 1ash, of which 8 satisfy the size requirements. 1.00046 [ 1.14316] ((1 . 1) (2 . 2) (3 . 3) (4 . 5) (5 . 6) (6 . 7) (7 . 8)) 3.311 {0/18:21} B:0 1.16704 [ 1.33358] ((1 . 1) (2 . 2) (4 . 5) (5 . 6) (6 . 7) (7 . 8)) 3.532 {0/12:15} B:0 2.24605 [ 2.37972] ((1 . 1) (2 . 2) (3 . 3) (5 . 5)) 8.247 {1/5:6} B:0 2.26271 [ 2.39377] ((2 . 4) (3 . 5) (4 . 6) (6 . 8)) 15.291 {1/5:6} B:0 2.56042 [ 2.59989] ((1 . 2) (4 . 5) (5 . 6) (6 . 7) (7 . 8)) 8.338 {2/8:10} B:0 SIMILARITY (1/min{score1}): 0.9995 [and 1/min{score2}: 0.8748] [1796, 259]: Comparing 1gcv_B and 1b0b, based on their crossing files. There are 7 (7 H + 0 S) secondary structure elements in 1gcv_B, of which 7 satisfy the size requirements. There are 8 (8 H + 0 S) secondary structure elements in 1b0b, of which 7 satisfy the size requirements. 1.00024 [ 1.00024] ((1 . 1) (2 . 2) (3 . 3) (4 . 5) (5 . 6) (6 . 7) (7 . 8)) 2.815 {0/19:21} B:0 3.09282 [ 3.09282] ((1 . 1) (2 . 3) (4 . 5) (5 . 6) (6 . 7) (7 . 8)) 5.567 {4/13:15} B:0 SIMILARITY (1/min{score1}): 0.9998 [and 1/min{score2}: 0.9998] [1796, 317]: Comparing 1gcv_B and 1b8d_A, based on their crossing files. There are 7 (7 H + 0 S) secondary structure elements in 1gcv_B, of which 7 satisfy the size requirements. There are 10 (10 H + 0 S) secondary structure elements in 1b8d_A, of which 9 satisfy the size requirements. 1.26275 [ 1.54868] ((1 . 3) (2 . 4) (4 . 6) (5 . 8) (6 . 9) (7 . 10)) 4.616 {1/11:15} B:0 1.76624 [ 2.25771] ((4 . 1) (5 . 2) (6 . 4) (7 . 6)) 12.332 {0/4:6} B:0 4.29899 [ 4.31978] ((2 . 10) (3 . 3) (5 . 2) (6 . 9) (7 . 6)) 12.377 {3/7:10} B:3 SIMILARITY (1/min{score1}): 0.7919 [and 1/min{score2}: 0.6457] [1796, 586]: Comparing 1gcv_B and 1cg5_B, based on their crossing files. There are 7 (7 H + 0 S) secondary structure elements in 1gcv_B, of which 7 satisfy the size requirements. There are 8 (8 H + 0 S) secondary structure elements in 1cg5_B, of which 8 satisfy the size requirements. 1.00002 [ 1.14287] ((1 . 1) (2 . 2) (3 . 3) (4 . 5) (5 . 6) (6 . 7) (7 . 8)) 1.494 {0/20:21} B:0 1.16667 [ 1.33334] ((1 . 1) (2 . 2) (4 . 5) (5 . 6) (6 . 7) (7 . 8)) 1.260 {0/14:15} B:0 2.30626 [ 2.35965] ((1 . 2) (4 . 5) (5 . 6) (6 . 7) (7 . 8)) 7.973 {2/9:10} B:0 4.03653 [ 4.06146] ((3 . 1) (4 . 2) (6 . 5) (7 . 6)) 9.017 {2/5:6} B:0 4.03751 [ 4.06243] ((1 . 4) (4 . 6) (5 . 7) (6 . 8)) 12.391 {2/5:6} B:0 SIMILARITY (1/min{score1}): 0.9999 [and 1/min{score2}: 0.8750] [1796, 656]: Comparing 1gcv_B and 1cqx_A, based on their crossing files. There are 7 (7 H + 0 S) secondary structure elements in 1gcv_B, of which 7 satisfy the size requirements. There are 26 (14 H + 12 S) secondary structure elements in 1cqx_A, of which 7 satisfy the size requirements. 1.00078 [ 1.00078] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7)) 3.787 {0/19:21} B:0 2.04433 [ 2.04433] ((1 . 3) (2 . 4) (3 . 5) (6 . 7)) 12.490 {1/6:6} B:0 2.30583 [ 2.30583] ((1 . 3) (2 . 5) (3 . 4) (6 . 6) (7 . 2)) 7.198 {2/9:10} B:2 SIMILARITY (1/min{score1}): 0.9992 [and 1/min{score2}: 0.9992] [1796, 876]: Comparing 1gcv_B and 1dlw_A, based on their crossing files. There are 7 (7 H + 0 S) secondary structure elements in 1gcv_B, of which 7 satisfy the size requirements. There are 8 (8 H + 0 S) secondary structure elements in 1dlw_A, of which 7 satisfy the size requirements. 1.16776 [ 1.16776] ((2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7)) 4.623 {0/13:15} B:0 1.22293 [ 1.22293] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7)) 4.918 {2/19:21} B:0 2.30687 [ 2.30687] ((2 . 1) (4 . 4) (5 . 5) (6 . 6) (7 . 7)) 8.810 {2/9:10} B:0 SIMILARITY (1/min{score1}): 0.8563 [and 1/min{score2}: 0.8563] [1796, 877]: Comparing 1gcv_B and 1dly_A, based on their crossing files. There are 7 (7 H + 0 S) secondary structure elements in 1gcv_B, of which 7 satisfy the size requirements. There are 8 (8 H + 0 S) secondary structure elements in 1dly_A, of which 7 satisfy the size requirements. 1.16771 [ 1.16771] ((2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7)) 4.567 {0/13:15} B:0 1.75197 [ 1.75197] ((1 . 5) (2 . 6) (3 . 7) (4 . 8)) 7.256 {0/5:6} B:0 2.03508 [ 2.03508] ((1 . 3) (2 . 4) (5 . 7) (6 . 8)) 7.840 {1/6:6} B:0 3.85442 [ 3.85442] ((1 . 3) (2 . 6) (3 . 7) (4 . 8) (6 . 2) (7 . 4)) 6.860 {5/13:15} B:1 5.00775 [ 5.00775] ((1 . 3) (2 . 6) (3 . 7) (6 . 2) (7 . 4)) 7.227 {4/8:10} B:1 SIMILARITY (1/min{score1}): 0.8564 [and 1/min{score2}: 0.8564] [1796, 1098]: Comparing 1gcv_B and 1eca, based on their crossing files. There are 7 (7 H + 0 S) secondary structure elements in 1gcv_B, of which 7 satisfy the size requirements. There are 8 (8 H + 0 S) secondary structure elements in 1eca, of which 8 satisfy the size requirements. 1.00011 [ 1.14293] ((1 . 1) (2 . 2) (3 . 3) (4 . 5) (5 . 6) (6 . 7) (7 . 8)) 2.302 {0/19:21} B:0 1.16673 [ 1.33337] ((1 . 1) (2 . 2) (4 . 5) (5 . 6) (6 . 7) (7 . 8)) 2.239 {0/13:15} B:0 2.24665 [ 2.38023] ((3 . 1) (4 . 2) (5 . 4) (7 . 7)) 8.949 {1/5:6} B:0 2.30643 [ 2.35981] ((1 . 2) (4 . 5) (5 . 6) (6 . 7) (7 . 8)) 8.234 {2/9:10} B:0 3.09282 [ 3.10381] ((1 . 1) (2 . 3) (4 . 5) (5 . 6) (6 . 7) (7 . 8)) 5.519 {4/13:15} B:0 SIMILARITY (1/min{score1}): 0.9999 [and 1/min{score2}: 0.8749] [1796, 1282]: Comparing 1gcv_B and 1ew6_A, based on their crossing files. There are 7 (7 H + 0 S) secondary structure elements in 1gcv_B, of which 7 satisfy the size requirements. There are 10 (10 H + 0 S) secondary structure elements in 1ew6_A, of which 8 satisfy the size requirements. 1.02366 [ 1.15893] ((1 . 1) (2 . 2) (3 . 3) (4 . 6) (5 . 7) (6 . 9) (7 . 10)) 3.673 {1/18:21} B:0 1.58523 [ 1.73334] ((3 . 5) (4 . 6) (5 . 7) (6 . 9) (7 . 10)) 6.762 {1/8:10} B:0 2.03641 [ 2.20917] ((2 . 2) (3 . 3) (4 . 5) (5 . 6)) 9.051 {1/6:6} B:0 SIMILARITY (1/min{score1}): 0.9769 [and 1/min{score2}: 0.8629] [1796, 1503]: Comparing 1gcv_B and 1fhj_B, based on their crossing files. There are 7 (7 H + 0 S) secondary structure elements in 1gcv_B, of which 7 satisfy the size requirements. There are 8 (8 H + 0 S) secondary structure elements in 1fhj_B, of which 8 satisfy the size requirements. 1.00009 [ 1.14292] ((1 . 1) (2 . 2) (3 . 3) (4 . 5) (5 . 6) (6 . 7) (7 . 8)) 2.205 {0/20:21} B:0 1.16672 [ 1.33337] ((1 . 1) (2 . 2) (4 . 5) (5 . 6) (6 . 7) (7 . 8)) 2.145 {0/14:15} B:0 2.30645 [ 2.35982] ((1 . 2) (4 . 5) (5 . 6) (6 . 7) (7 . 8)) 8.260 {2/9:10} B:0 3.35918 [ 3.37692] ((2 . 3) (4 . 5) (5 . 6) (6 . 7) (7 . 8)) 6.764 {3/9:10} B:0 3.39569 [ 3.43720] ((3 . 1) (4 . 2) (5 . 4) (7 . 7)) 9.459 {2/6:6} B:0 SIMILARITY (1/min{score1}): 0.9999 [and 1/min{score2}: 0.8750] [1796, 1795]: Comparing 1gcv_B and 1gcv_A, based on their crossing files. There are 7 (7 H + 0 S) secondary structure elements in 1gcv_B, of which 7 satisfy the size requirements. There are 8 (8 H + 0 S) secondary structure elements in 1gcv_A, of which 8 satisfy the size requirements. 1.00006 [ 1.14290] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 6) (6 . 7) (7 . 8)) 1.985 {0/19:21} B:0 1.16671 [ 1.33336] ((1 . 1) (2 . 2) (4 . 4) (5 . 6) (6 . 7) (7 . 8)) 2.051 {0/13:15} B:0 2.30623 [ 2.35962] ((1 . 2) (4 . 4) (5 . 6) (6 . 7) (7 . 8)) 7.928 {2/9:10} B:0 SIMILARITY (1/min{score1}): 0.9999 [and 1/min{score2}: 0.8750] [1796, 1796]: Comparing 1gcv_B and 1gcv_B, based on their crossing files. There are 7 (7 H + 0 S) secondary structure elements in 1gcv_B, of which 7 satisfy the size requirements. There are 7 (7 H + 0 S) secondary structure elements in 1gcv_B, of which 7 satisfy the size requirements. 1.00000 [ 1.00000] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7)) 0.000 {0/20:21} B:0 SIMILARITY (1/min{score1}): 1.0000 [and 1/min{score2}: 1.0000] [1796, 2126]: Comparing 1gcv_B and 1h7w_A, based on their crossing files. There are 7 (7 H + 0 S) secondary structure elements in 1gcv_B, of which 7 satisfy the size requirements. There are 81 (45 H + 36 S) secondary structure elements in 1h7w_A, of which 8 satisfy the size requirements. 4.03752 [ 4.06244] ((3 . 3) (4 . 5) (5 . 6) (6 . 7)) 12.421 {2/5:6} B:0 SIMILARITY (1/min{score1}): 0.2477 [and 1/min{score2}: 0.2462] [1796, 2142]: Comparing 1gcv_B and 1h97_A, based on their crossing files. There are 7 (7 H + 0 S) secondary structure elements in 1gcv_B, of which 7 satisfy the size requirements. There are 9 (9 H + 0 S) secondary structure elements in 1h97_A, of which 9 satisfy the size requirements. 1.02344 [ 1.29699] ((1 . 1) (2 . 2) (3 . 3) (4 . 6) (5 . 7) (6 . 8) (7 . 9)) 3.322 {1/18:21} B:0 1.16702 [ 1.50017] ((1 . 1) (2 . 2) (4 . 6) (5 . 7) (6 . 8) (7 . 9)) 3.488 {0/12:15} B:0 1.21857 [ 1.52545] ((2 . 2) (3 . 3) (4 . 6) (5 . 7) (6 . 8) (7 . 9)) 3.478 {1/13:15} B:0 1.75521 [ 2.25246] ((4 . 4) (5 . 6) (6 . 7) (7 . 8)) 9.262 {0/4:6} B:0 2.56036 [ 2.65421] ((1 . 2) (4 . 6) (5 . 7) (6 . 8) (7 . 9)) 8.215 {2/8:10} B:0 SIMILARITY (1/min{score1}): 0.9771 [and 1/min{score2}: 0.7710] [1796, 2233]: Comparing 1gcv_B and 1hlb, based on their crossing files. There are 7 (7 H + 0 S) secondary structure elements in 1gcv_B, of which 7 satisfy the size requirements. There are 9 (9 H + 0 S) secondary structure elements in 1hlb, of which 7 satisfy the size requirements. 1.16677 [ 1.16677] ((1 . 1) (2 . 2) (4 . 6) (5 . 7) (6 . 8) (7 . 9)) 2.568 {0/14:15} B:0 1.52269 [ 1.52269] ((3 . 5) (4 . 6) (5 . 7) (6 . 8) (7 . 9)) 5.077 {1/9:10} B:0 4.03653 [ 4.03653] ((3 . 1) (4 . 2) (6 . 6) (7 . 7)) 9.016 {2/5:6} B:0 6.67472 [ 6.67472] ((1 . 1) (2 . 2) (5 . 6) (7 . 8)) 10.426 {4/6:6} B:0 1.75052 [ 1.75052] ((2 . 6) (3 . 1) (4 . 2) (7 . 8)) 5.192 {0/6:6} B:1 SIMILARITY (1/min{score1}): 0.8571 [and 1/min{score2}: 0.8571] [1796, 2465]: Comparing 1gcv_B and 1idr_A, based on their crossing files. There are 7 (7 H + 0 S) secondary structure elements in 1gcv_B, of which 7 satisfy the size requirements. There are 8 (8 H + 0 S) secondary structure elements in 1idr_A, of which 7 satisfy the size requirements. 1.16711 [ 1.16711] ((2 . 3) (3 . 4) (4 . 5) (5 . 6) (6 . 7) (7 . 8)) 3.694 {0/13:15} B:0 2.25182 [ 2.25182] ((2 . 4) (4 . 6) (5 . 7) (6 . 8)) 12.155 {1/5:6} B:0 2.56047 [ 2.56047] ((3 . 3) (4 . 5) (5 . 6) (6 . 7) (7 . 8)) 8.431 {2/8:10} B:0 3.76827 [ 3.76827] ((1 . 1) (4 . 5) (5 . 6) (6 . 7) (7 . 8)) 7.206 {3/8:10} B:0 1.76308 [ 1.76308] ((2 . 6) (4 . 4) (6 . 7) (7 . 8)) 11.675 {0/5:6} B:1 SIMILARITY (1/min{score1}): 0.8568 [and 1/min{score2}: 0.8568] [1796, 2580]: Comparing 1gcv_B and 1ird_A, based on their crossing files. There are 7 (7 H + 0 S) secondary structure elements in 1gcv_B, of which 7 satisfy the size requirements. There are 8 (8 H + 0 S) secondary structure elements in 1ird_A, of which 8 satisfy the size requirements. 1.00036 [ 1.14310] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 6) (6 . 7) (7 . 8)) 3.121 {0/19:21} B:0 1.01657 [ 1.15407] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 7) (7 . 8)) 4.345 {1/20:21} B:0 1.16692 [ 1.33350] ((1 . 1) (2 . 2) (4 . 4) (5 . 6) (6 . 7) (7 . 8)) 3.193 {0/13:15} B:0 1.58597 [ 1.73391] ((1 . 2) (4 . 4) (5 . 6) (6 . 7) (7 . 8)) 7.319 {1/8:10} B:0 2.04678 [ 2.21730] ((2 . 3) (4 . 6) (5 . 7) (6 . 8)) 13.142 {1/6:6} B:0 SIMILARITY (1/min{score1}): 0.9996 [and 1/min{score2}: 0.8748] [1796, 2597]: Comparing 1gcv_B and 1it2_A, based on their crossing files. There are 7 (7 H + 0 S) secondary structure elements in 1gcv_B, of which 7 satisfy the size requirements. There are 8 (8 H + 0 S) secondary structure elements in 1it2_A, of which 7 satisfy the size requirements. 1.01890 [ 1.01890] ((1 . 1) (2 . 2) (3 . 3) (4 . 5) (5 . 6) (6 . 7) (7 . 8)) 2.869 {1/19:21} B:0 1.16683 [ 1.16683] ((1 . 1) (2 . 2) (4 . 5) (5 . 6) (6 . 7) (7 . 8)) 2.862 {0/13:15} B:0 2.56025 [ 2.56025] ((1 . 2) (4 . 5) (5 . 6) (6 . 7) (7 . 8)) 7.999 {2/8:10} B:0 4.03660 [ 4.03660] ((3 . 1) (4 . 2) (6 . 5) (7 . 6)) 9.425 {2/5:6} B:0 1.20724 [ 1.20724] ((1 . 3) (2 . 5) (3 . 1) (4 . 2) (6 . 8) (7 . 7)) 5.199 {1/14:15} B:2 SIMILARITY (1/min{score1}): 0.9815 [and 1/min{score2}: 0.9815] [1796, 2598]: Comparing 1gcv_B and 1ith_A, based on their crossing files. There are 7 (7 H + 0 S) secondary structure elements in 1gcv_B, of which 7 satisfy the size requirements. There are 10 (10 H + 0 S) secondary structure elements in 1ith_A, of which 10 satisfy the size requirements. 1.01595 [ 1.43414] ((1 . 1) (2 . 3) (3 . 4) (4 . 6) (5 . 8) (6 . 9) (7 . 10)) 3.701 {1/20:21} B:0 1.16722 [ 1.66686] ((1 . 1) (2 . 3) (4 . 6) (5 . 8) (6 . 9) (7 . 10)) 3.890 {0/14:15} B:0 1.18974 [ 1.50779] ((1 . 1) (2 . 3) (3 . 4) (4 . 6) (5 . 7) (6 . 9) (7 . 10)) 3.913 {2/20:21} B:0 1.56693 [ 1.85700] ((1 . 2) (2 . 3) (4 . 6) (5 . 7) (6 . 9) (7 . 10)) 5.151 {2/14:15} B:0 1.63962 [ 1.79546] ((1 . 2) (2 . 3) (3 . 4) (4 . 6) (5 . 7) (6 . 9) (7 . 10)) 5.271 {3/19:21} B:0 SIMILARITY (1/min{score1}): 0.9843 [and 1/min{score2}: 0.6973] [1796, 2815]: Comparing 1gcv_B and 1jbo_A, based on their crossing files. There are 7 (7 H + 0 S) secondary structure elements in 1gcv_B, of which 7 satisfy the size requirements. There are 9 (9 H + 0 S) secondary structure elements in 1jbo_A, of which 9 satisfy the size requirements. 1.00438 [ 1.28778] ((1 . 2) (2 . 3) (3 . 4) (4 . 5) (5 . 7) (6 . 8) (7 . 9)) 5.830 {0/19:21} B:0 5.01891 [ 5.05074] ((2 . 3) (3 . 4) (5 . 5) (7 . 8)) 9.617 {3/6:6} B:0 SIMILARITY (1/min{score1}): 0.9956 [and 1/min{score2}: 0.7765] [1796, 2816]: Comparing 1gcv_B and 1jbo_B, based on their crossing files. There are 7 (7 H + 0 S) secondary structure elements in 1gcv_B, of which 7 satisfy the size requirements. There are 10 (10 H + 0 S) secondary structure elements in 1jbo_B, of which 9 satisfy the size requirements. 1.26260 [ 1.54860] ((1 . 3) (2 . 4) (4 . 6) (5 . 8) (6 . 9) (7 . 10)) 4.404 {1/11:15} B:0 1.40043 [ 1.80020] ((2 . 4) (4 . 6) (5 . 8) (6 . 9) (7 . 10)) 4.188 {0/8:10} B:0 1.58399 [ 1.89704] ((2 . 4) (4 . 6) (5 . 7) (6 . 9) (7 . 10)) 5.310 {1/8:10} B:0 2.52928 [ 2.57748] ((1 . 3) (2 . 4) (4 . 6) (5 . 7) (6 . 9) (7 . 10)) 4.997 {3/12:15} B:0 2.64398 [ 2.84071] ((4 . 1) (5 . 2) (6 . 4) (7 . 6)) 12.940 {1/4:6} B:0 SIMILARITY (1/min{score1}): 0.7920 [and 1/min{score2}: 0.6457] [1796, 2956]: Comparing 1gcv_B and 1jl7_A, based on their crossing files. There are 7 (7 H + 0 S) secondary structure elements in 1gcv_B, of which 7 satisfy the size requirements. There are 7 (7 H + 0 S) secondary structure elements in 1jl7_A, of which 7 satisfy the size requirements. 1.01879 [ 1.01879] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7)) 2.495 {1/19:21} B:0 1.16678 [ 1.16678] ((1 . 1) (2 . 2) (4 . 4) (5 . 5) (6 . 6) (7 . 7)) 2.608 {0/13:15} B:0 2.56021 [ 2.56021] ((1 . 2) (4 . 4) (5 . 5) (6 . 6) (7 . 7)) 7.911 {2/8:10} B:0 4.03710 [ 4.03710] ((1 . 2) (4 . 5) (6 . 6) (7 . 7)) 11.329 {2/5:6} B:0 SIMILARITY (1/min{score1}): 0.9816 [and 1/min{score2}: 0.9816] [1796, 3283]: Comparing 1gcv_B and 1kf6_B, based on their crossing files. There are 7 (7 H + 0 S) secondary structure elements in 1gcv_B, of which 7 satisfy the size requirements. There are 21 (14 H + 7 S) secondary structure elements in 1kf6_B, of which 8 satisfy the size requirements. 1.17100 [ 1.33624] ((2 . 15) (3 . 16) (4 . 17) (5 . 18) (6 . 20) (7 . 21)) 6.526 {0/12:15} B:0 6.01092 [ 6.01853] ((3 . 17) (4 . 18) (5 . 20) (6 . 21)) 8.522 {3/5:6} B:0 SIMILARITY (1/min{score1}): 0.8540 [and 1/min{score2}: 0.7484] [1796, 3406]: Comparing 1gcv_B and 1kr7_A, based on their crossing files. There are 7 (7 H + 0 S) secondary structure elements in 1gcv_B, of which 7 satisfy the size requirements. There are 7 (7 H + 0 S) secondary structure elements in 1kr7_A, of which 7 satisfy the size requirements. 1.16697 [ 1.16697] ((2 . 1) (3 . 2) (4 . 4) (5 . 5) (6 . 6) (7 . 7)) 3.362 {0/14:15} B:0 1.40556 [ 1.40556] ((2 . 1) (3 . 2) (4 . 3) (6 . 6) (7 . 7)) 7.963 {0/9:10} B:0 2.30650 [ 2.30650] ((1 . 1) (4 . 4) (5 . 5) (6 . 6) (7 . 7)) 8.339 {2/9:10} B:0 4.29178 [ 4.29178] ((1 . 4) (2 . 1) (4 . 2) (5 . 5) (6 . 6) (7 . 7)) 7.936 {6/14:15} B:1 SIMILARITY (1/min{score1}): 0.8569 [and 1/min{score2}: 0.8569] [1796, 3899]: Comparing 1gcv_B and 1mba, based on their crossing files. There are 7 (7 H + 0 S) secondary structure elements in 1gcv_B, of which 7 satisfy the size requirements. There are 8 (8 H + 0 S) secondary structure elements in 1mba, of which 8 satisfy the size requirements. 1.00023 [ 1.14301] ((1 . 1) (2 . 2) (3 . 3) (4 . 5) (5 . 6) (6 . 7) (7 . 8)) 2.784 {0/18:21} B:0 1.16683 [ 1.33345] ((1 . 1) (2 . 2) (4 . 5) (5 . 6) (6 . 7) (7 . 8)) 2.888 {0/12:15} B:0 2.56046 [ 2.59993] ((1 . 2) (4 . 5) (5 . 6) (6 . 7) (7 . 8)) 8.419 {2/8:10} B:0 3.39566 [ 3.43717] ((1 . 1) (2 . 2) (3 . 3) (6 . 6)) 9.350 {2/6:6} B:0 5.71952 [ 5.72314] ((1 . 1) (2 . 2) (4 . 5) (6 . 8) (7 . 6)) 8.305 {4/7:10} B:1 SIMILARITY (1/min{score1}): 0.9998 [and 1/min{score2}: 0.8749] [1796, 4216]: Comparing 1gcv_B and 1nek_B, based on their crossing files. There are 7 (7 H + 0 S) secondary structure elements in 1gcv_B, of which 7 satisfy the size requirements. There are 16 (9 H + 7 S) secondary structure elements in 1nek_B, of which 7 satisfy the size requirements. 1.40207 [ 1.40207] ((3 . 12) (4 . 13) (5 . 14) (6 . 15) (7 . 16)) 6.217 {0/8:10} B:0 2.24556 [ 2.24556] ((3 . 10) (4 . 14) (5 . 15) (6 . 16)) 7.504 {1/5:6} B:0 4.03846 [ 4.03846] ((1 . 10) (4 . 14) (5 . 15) (6 . 16)) 14.146 {2/5:6} B:0 6.01089 [ 6.01089] ((1 . 9) (4 . 12) (6 . 15) (7 . 16)) 7.676 {3/5:6} B:0 6.01092 [ 6.01092] ((3 . 12) (4 . 13) (5 . 14) (6 . 16)) 8.660 {3/5:6} B:0 SIMILARITY (1/min{score1}): 0.7132 [and 1/min{score2}: 0.7132] [1796, 4241]: Comparing 1gcv_B and 1ngk_A, based on their crossing files. There are 7 (7 H + 0 S) secondary structure elements in 1gcv_B, of which 7 satisfy the size requirements. There are 8 (8 H + 0 S) secondary structure elements in 1ngk_A, of which 8 satisfy the size requirements. 1.16736 [ 1.33379] ((2 . 2) (3 . 3) (4 . 4) (5 . 6) (6 . 7) (7 . 8)) 4.116 {0/12:15} B:0 1.22160 [ 1.37117] ((2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 7) (7 . 8)) 6.312 {1/13:15} B:0 1.59811 [ 1.74323] ((2 . 1) (4 . 4) (5 . 5) (6 . 7) (7 . 8)) 11.195 {1/8:10} B:0 1.75369 [ 2.00247] ((1 . 3) (2 . 4) (3 . 5) (6 . 8)) 8.491 {0/5:6} B:0 1.75696 [ 2.00468] ((2 . 4) (3 . 5) (4 . 6) (6 . 8)) 9.960 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.8566 [and 1/min{score2}: 0.7497] [1796, 4675]: Comparing 1gcv_B and 1oj6_A, based on their crossing files. There are 7 (7 H + 0 S) secondary structure elements in 1gcv_B, of which 7 satisfy the size requirements. There are 8 (8 H + 0 S) secondary structure elements in 1oj6_A, of which 8 satisfy the size requirements. 1.00004 [ 1.14288] ((1 . 1) (2 . 2) (3 . 3) (4 . 5) (5 . 6) (6 . 7) (7 . 8)) 1.817 {0/18:21} B:0 1.26110 [ 1.34115] ((1 . 1) (2 . 2) (3 . 4) (4 . 5) (5 . 6) (6 . 7) (7 . 8)) 4.280 {2/18:21} B:0 2.25963 [ 2.39117] ((2 . 4) (3 . 5) (4 . 6) (6 . 8)) 14.592 {1/5:6} B:0 2.56045 [ 2.59992] ((1 . 1) (2 . 2) (3 . 3) (4 . 5) (6 . 6)) 8.404 {2/8:10} B:0 5.00770 [ 5.01309] ((1 . 1) (2 . 2) (4 . 5) (5 . 6) (6 . 8)) 5.774 {4/8:10} B:0 SIMILARITY (1/min{score1}): 0.9999 [and 1/min{score2}: 0.8750] [1796, 4759]: Comparing 1gcv_B and 1or4_A, based on their crossing files. There are 7 (7 H + 0 S) secondary structure elements in 1gcv_B, of which 7 satisfy the size requirements. There are 11 (9 H + 2 S) secondary structure elements in 1or4_A, of which 8 satisfy the size requirements. 1.00062 [ 1.14327] ((1 . 4) (2 . 5) (3 . 6) (4 . 7) (5 . 9) (6 . 10) (7 . 11)) 3.571 {0/19:21} B:0 2.24562 [ 2.37936] ((2 . 4) (5 . 9) (6 . 10) (7 . 11)) 7.607 {1/5:6} B:0 2.30682 [ 2.36017] ((2 . 4) (4 . 3) (5 . 9) (6 . 10) (7 . 11)) 8.749 {2/9:10} B:1 SIMILARITY (1/min{score1}): 0.9994 [and 1/min{score2}: 0.8747] [1796, 5374]: Comparing 1gcv_B and 1qla_B, based on their crossing files. There are 7 (7 H + 0 S) secondary structure elements in 1gcv_B, of which 7 satisfy the size requirements. There are 19 (12 H + 7 S) secondary structure elements in 1qla_B, of which 8 satisfy the size requirements. 1.16897 [ 1.33488] ((1 . 12) (3 . 14) (4 . 15) (5 . 16) (6 . 18) (7 . 19)) 5.570 {0/11:15} B:0 1.40150 [ 1.60100] ((3 . 14) (4 . 15) (5 . 16) (6 . 18) (7 . 19)) 5.732 {0/8:10} B:0 1.75912 [ 2.00613] ((2 . 11) (4 . 12) (5 . 15) (7 . 18)) 10.660 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.8555 [and 1/min{score2}: 0.7491] [1796, 6457]: Comparing 1gcv_B and 2gdm, based on their crossing files. There are 7 (7 H + 0 S) secondary structure elements in 1gcv_B, of which 7 satisfy the size requirements. There are 7 (7 H + 0 S) secondary structure elements in 2gdm, of which 7 satisfy the size requirements. 1.01891 [ 1.01891] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7)) 2.912 {1/19:21} B:0 1.16689 [ 1.16689] ((1 . 1) (2 . 2) (4 . 4) (5 . 5) (6 . 6) (7 . 7)) 3.089 {0/13:15} B:0 2.25284 [ 2.25284] ((3 . 2) (5 . 4) (6 . 5) (7 . 6)) 12.561 {1/5:6} B:0 2.30757 [ 2.30757] ((1 . 2) (4 . 4) (5 . 5) (6 . 6) (7 . 7)) 9.535 {2/9:10} B:0 4.03676 [ 4.03676] ((1 . 1) (3 . 3) (5 . 4) (7 . 6)) 10.145 {2/5:6} B:0 SIMILARITY (1/min{score1}): 0.9814 [and 1/min{score2}: 0.9814] [1796, 6595]: Comparing 1gcv_B and 3sdh_A, based on their crossing files. There are 7 (7 H + 0 S) secondary structure elements in 1gcv_B, of which 7 satisfy the size requirements. There are 9 (9 H + 0 S) secondary structure elements in 3sdh_A, of which 9 satisfy the size requirements. 1.00013 [ 1.28578] ((1 . 2) (2 . 3) (3 . 4) (4 . 6) (5 . 7) (6 . 8) (7 . 9)) 2.415 {0/19:21} B:0 1.16676 [ 1.50004] ((1 . 2) (2 . 3) (4 . 6) (5 . 7) (6 . 8) (7 . 9)) 2.491 {0/13:15} B:0 2.03875 [ 2.40628] ((3 . 1) (4 . 2) (5 . 4) (6 . 6)) 10.443 {1/6:6} B:0 2.25422 [ 2.54681] ((2 . 5) (4 . 7) (5 . 8) (6 . 9)) 13.050 {1/5:6} B:0 2.56030 [ 2.65416] ((1 . 3) (4 . 6) (5 . 7) (6 . 8) (7 . 9)) 8.098 {2/8:10} B:0 SIMILARITY (1/min{score1}): 0.9999 [and 1/min{score2}: 0.7777] -------------------------------------------------------------------------------------------------------------------------