Crossing file for protein chain 1hpi derived from PDB id 1hpi, with residue numbers and secondary structures determined by DSSP. Maximum residue index seen: 71. 6 secondary structure lines for helices with at least 3 residues and strands with at least 2 residues: Type 'ID' RESIDUES CENTROID TANGENT START END ---- ----- -------- ------------------------ ------------------------ ------------------------ ------------------------ S 1 S1:1 2 3 37.858 83.510 1.815 0.865 0.015 -0.501 36.226 83.481 2.761 39.491 83.538 0.869 H 2 H1 9 15 50.809 87.417 7.792 0.918 -0.397 -0.007 46.768 89.167 7.823 54.654 85.752 7.762 H 3 H2 20 22 56.087 80.952 -5.182 0.832 -0.198 0.518 55.255 81.150 -5.700 56.919 80.753 -4.664 H 4 H3 34 36 49.687 71.543 0.554 -0.630 -0.213 0.747 50.317 71.756 -0.193 49.057 71.330 1.301 S 5 S2:1 48 50 40.892 75.825 1.402 -0.046 -0.167 0.985 41.059 76.424 -2.131 40.726 75.228 4.932 S 6 S3:1 57 60 42.357 79.813 2.061 0.714 -0.218 -0.665 38.897 80.872 5.287 45.969 78.707 -1.305 Crossing matrix using radian threshold 0.50: . + - . - . + . - - - + - - . - - + . - - . - . - - - - . - . + + . - . Matrix of interline angles: 0.000 0.658 -1.096 -2.745 -2.137 0.324 0.658 0.000 -0.576 -2.092 -1.554 0.728 -1.096 -0.576 0.000 -1.666 -1.042 1.274 -2.745 -2.092 -1.666 0.000 -0.643 2.690 -2.137 -1.554 -1.042 -0.643 0.000 -2.281 0.324 0.728 1.274 2.690 -2.281 0.000 Matrix of line centroid separations: 0.000 14.789 19.692 16.873 8.272 5.828 14.789 0.000 15.426 17.483 16.539 12.732 19.692 15.426 0.000 12.743 17.335 15.565 16.873 17.483 12.743 0.000 9.819 11.153 8.272 16.539 17.335 9.819 0.000 4.299 5.828 12.732 15.565 11.153 4.299 0.000 Matrix of minimum separations between constituent atoms (CA CB CD CD1 CD2 CE CE1 CE2 CE3 CG CG1 CG2 CH2 CZ CZ2 CZ3): 0.000 10.152 15.493 12.091 3.443 4.040 10.152 0.000 10.631 11.323 10.072 6.473 15.493 10.631 0.000 7.650 11.669 8.396 12.091 11.323 7.650 0.000 7.657 4.218 3.443 10.072 11.669 7.657 0.000 3.698 4.040 6.473 8.396 4.218 3.698 0.000 END ----------------------------------------------------------------------------------------------------------------------------------------------- Copyright (C) 2005 by Michael A. Erdmann. This file was automatically generated on Friday, September 16, 2005. The data contained in this file are approximations, possibly faulty, and are provided "as is", without express or implied warranty of any kind. Please reference: M. A. Erdmann. Protein Similarity from Knot Theory: Geometric Convolution and Line Weavings. Journal of Computational Biology. 12(6), 2005, pp.609-637. -----------------------------------------------------------------------------------------------------------------------------------------------