Crossing file for protein chain 1ego derived from PDB id 1ego, with residue numbers and secondary structures determined by DSSP. Maximum residue index seen: 85. 8 secondary structure lines for helices with at least 3 residues and strands with at least 2 residues: Type 'ID' RESIDUES CENTROID TANGENT START END ---- ----- -------- ------------------------ ------------------------ ------------------------ ------------------------ S 1 S1:1 2 6 -0.979 -4.251 -0.360 0.723 0.041 -0.689 -5.917 -4.528 4.345 3.785 -3.983 -4.899 H 2 H1 12 28 3.715 2.841 4.698 -0.532 -0.042 0.846 10.186 3.349 -5.599 -2.289 2.369 14.254 S 3 S2:1 32 36 1.357 -6.451 2.710 0.612 -0.288 -0.736 -2.804 -4.493 7.714 5.328 -8.319 -2.065 H 4 H2 38 42 7.513 -11.073 -9.176 -0.315 -0.906 -0.283 8.441 -8.401 -8.343 6.595 -13.717 -10.000 H 5 H3 46 52 -3.689 -5.996 -14.658 -0.823 0.286 0.491 -0.046 -7.265 -16.833 -6.924 -4.869 -12.727 S 6 S3:1 61 64 -2.410 -0.855 -4.140 -0.778 -0.289 0.558 1.652 0.653 -7.050 -6.368 -2.323 -1.304 S 7 S4:1 67 70 -6.417 0.863 -6.723 0.601 0.781 -0.172 -9.302 -2.887 -5.897 -3.715 4.375 -7.496 H 8 H4 73 84 -4.647 8.908 1.073 -0.616 0.092 0.783 0.366 8.157 -5.299 -8.734 9.520 6.268 Crossing matrix using radian threshold 0.50: . . . + . . + . . . . - - . - . . . . - . - + . + - - . - - + - . - . - . - + . . . - - - . - . + - + + + - . - . . . - . . - . Matrix of interline angles: 0.000 2.893 0.352 1.641 2.744 -2.854 0.946 2.946 2.893 0.000 2.783 -1.605 -0.572 0.457 -2.091 -0.171 0.352 2.783 0.000 -1.291 -2.817 -2.505 1.298 -2.940 1.641 -1.605 -1.291 0.000 -1.711 -1.214 2.583 -1.682 2.744 -0.572 -2.817 -1.711 0.000 -0.589 1.934 -0.410 -2.854 0.457 -2.505 -1.214 -0.589 0.000 -2.480 -0.476 0.946 -2.091 1.298 2.583 1.934 -2.480 0.000 -2.018 2.946 -0.171 -2.940 -1.682 -0.410 -0.476 -2.018 0.000 Matrix of line centroid separations: 0.000 9.895 4.441 14.014 14.657 5.279 9.809 13.736 9.895 0.000 9.790 20.013 22.529 11.370 15.395 10.949 4.441 9.790 0.000 14.161 18.092 9.614 14.244 16.572 14.014 20.013 14.161 0.000 13.465 15.108 18.508 25.538 14.657 22.529 18.092 13.465 0.000 11.777 10.838 21.691 5.279 11.370 9.614 15.108 11.777 0.000 5.067 11.291 9.809 15.395 14.244 18.508 10.838 5.067 0.000 11.342 13.736 10.949 16.572 25.538 21.691 11.291 11.342 0.000 Matrix of minimum separations between constituent atoms (CA CB CD CD1 CD2 CE CE1 CE2 CE3 CG CG1 CG2 CH2 CZ CZ2 CZ3): 0.000 3.392 3.451 4.072 3.838 3.311 7.094 4.120 3.392 0.000 3.578 7.409 11.961 3.682 8.757 3.325 3.451 3.578 0.000 4.047 8.005 7.839 11.331 7.102 4.072 7.409 4.047 0.000 5.554 7.129 11.277 14.073 3.838 11.961 8.005 5.554 0.000 3.164 3.397 9.934 3.311 3.682 7.839 7.129 3.164 0.000 3.358 3.362 7.094 8.757 11.331 11.277 3.397 3.358 0.000 3.384 4.120 3.325 7.102 14.073 9.934 3.362 3.384 0.000 END ----------------------------------------------------------------------------------------------------------------------------------------------- Copyright (C) 2005 by Michael A. Erdmann. This file was automatically generated on Friday, September 16, 2005. The data contained in this file are approximations, possibly faulty, and are provided "as is", without express or implied warranty of any kind. Please reference: M. A. Erdmann. Protein Similarity from Knot Theory: Geometric Convolution and Line Weavings. Journal of Computational Biology. 12(6), 2005, pp.609-637. -----------------------------------------------------------------------------------------------------------------------------------------------