Crossing file for protein chain 1aep derived from PDB id 1aep, with residue numbers and secondary structures determined by DSSP. Maximum residue index seen: 153. 5 secondary structure lines for helices with at least 3 residues and strands with at least 2 residues: Type 'ID' RESIDUES CENTROID TANGENT START END ---- ----- -------- ------------------------ ------------------------ ------------------------ ------------------------ H 1 H1 2 25 25.442 16.616 -6.861 0.599 -0.762 0.248 15.208 29.640 -11.094 36.852 2.097 -2.143 H 2 H2 29 60 23.247 19.441 8.001 -0.719 0.693 0.045 39.787 3.508 6.968 5.744 36.302 9.094 H 3 H3 63 80 7.904 22.940 5.370 0.699 -0.696 0.162 -1.617 32.426 3.159 17.343 13.535 7.562 H 4 H4 89 116 16.561 15.023 -2.016 -0.614 0.699 -0.368 29.053 0.807 5.470 4.101 29.201 -9.483 H 5 H5 121 151 23.113 25.345 -1.248 0.812 -0.584 0.009 4.832 38.482 -1.454 41.628 12.041 -1.038 Crossing matrix using radian threshold 0.50: . . . . . . . . . . . . . . . . . . . . . . . . . Matrix of interline angles: 0.000 2.816 -0.147 3.005 -0.368 2.816 0.000 2.933 -0.429 -2.988 -0.147 2.933 0.000 2.919 -0.222 3.005 -0.429 2.919 0.000 2.713 -0.368 -2.988 -0.222 2.713 0.000 Matrix of line centroid separations: 0.000 15.287 22.298 10.242 10.637 15.287 0.000 15.955 12.829 10.973 22.298 15.955 0.000 13.863 16.760 10.242 12.829 13.863 0.000 12.251 10.637 10.973 16.760 12.251 0.000 Matrix of minimum separations between constituent atoms (CA CB CD CD1 CD2 CE CE1 CE2 CE3 CG CG1 CG2 CH2 CZ CZ2 CZ3): 0.000 3.282 7.161 3.382 3.094 3.282 0.000 3.508 3.396 3.544 7.161 3.508 0.000 3.411 3.935 3.382 3.396 3.411 0.000 3.499 3.094 3.544 3.935 3.499 0.000 END ----------------------------------------------------------------------------------------------------------------------------------------------- Copyright (C) 2005 by Michael A. Erdmann. This file was automatically generated on Friday, September 16, 2005. The data contained in this file are approximations, possibly faulty, and are provided "as is", without express or implied warranty of any kind. Please reference: M. A. Erdmann. Protein Similarity from Knot Theory: Geometric Convolution and Line Weavings. Journal of Computational Biology. 12(6), 2005, pp.609-637. -----------------------------------------------------------------------------------------------------------------------------------------------