Online resources

Computational Biology

TMpro transmembrane helix prediction: webserver and web service
Transmembrane helix prediction from primary sequence using TMpro, an algorithm that is built in analogy to latent semantic analysis model. Upto 4000 sequences may be submitted at a time.

Biological Language Modeling Toolkit (BLMT): A toolkit to compute n-gram frequencies (n-mer, k-mer oligomer frequencies) from protein or nucleotide sequence data. The data can be in FASTA format, in single or multiple sequences. It also computes yule values. The source code is in C, and may be installed on any standard computer. The system has been tested for upto 25MB data at a time. The web interface provides an interactive mechanism to compute these features without requirement to locally install the software. 

Latex bibliography: Transmembrane helix prediction & biological language modeling: tmpro.bib tmpro-big.bib (400+ references)

Language Technologies for Indian Language

Universal Library and Digital Library of India: The digital library (mirros in USA, India, China and Egypt) hold over a million books that are out of copyright (either because they are pre 1920 or because copyright has been provided by authors or publishers) - these books have been scanned and digitized and made available online.

Om transliteration editor for Indian Languages:A text editor that uses Om transliteration for text entry using normal (QWERTY) keyboard for Indian languages (Sanskrit, Bengali, Kannada, Malayalam, Tamil, Telugu). The editor sends the text to Microsoft Word where the standard features of formating and layout may be applied to beautify the text.

Telugu Morphological Generator: The web interface generates all the morphological forms upon entering a noun or a verb.   For example, enter a Telugu Masculine name, for e.g. raamud'u (using Om transliteration).. the web site will return - raamud'ini, raamud'itoo, etc.


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Madhavi Ganapathiraju's Lab

Application of Signal Processing and Machine Learning to study Problems in Computational Biomedicine. Focus areas of application: Membrane Protien Structure and Genome Wide Analysis for Genotype-Phenotype Relations