Yong Lu Wean Hall 4104 5000 Forbes Ave Pittsburgh, PA 15213 Email: (click to see) Phone: 412-268-3564 (My name in Chinese: 吕邕)

I am a fifth year Ph.D. student in the Computer Science Department at CMU. My advisors are Dr. Roni Rosenfeld and Dr. Ziv Bar-Joseph. I'm a member of the CMU Systems Biology Group .

My OpenPGP Public Key ID is B397E6F6, and the fingerprint is

689D 99E1 0D99 3062 18D1  
0424 8A91 84D6 B397 E6F6

You can find my contact info here.

Publications

• Y. Lu, R. Rosenfeld, I. Simon, G.J. Nau and Z. Bar-Joseph,
  A Probabilistic Generative Model for GO Enrichment Analysis, Nucleic Acids Research (forthcoming).
  (Also presented at RECOMB Satellite Conference on Systems Biology 2007. [conference website])
  
  
• Y. Lu, S. Mahony, P.V. Benos, R. Rosenfeld, I. Simon, L.L. Breeden and Z. Bar-Joseph,
  Selecting a threshold for identifying cell cycle genes, Genome Biology (forthcoming).
  
  
• Z. Bar-Joseph, Z. Siegfried, M. Brandeis, B. Brors, Y. Lu, R. Eils, B. D. Dynlact and I. Simon,
  Genome-wide transcriptional analysis of the human cell cycle identifies genes differentially regulated in normal and cancer cells, Proc Natl Acad Sci U S A 2008, 105:955-960.
  (Also accepted by ISMB 2008 Highlights Track)
  [ http | pdf | supporting information | CMU News Release | Post Gazette | WTAE ]
  
  
• Y. Lu, S. Mahony, P.V. Benos, R. Rosenfeld, I. Simon, L.L. Breeden and Z. Bar-Joseph,
  Combined Analysis Reveals a Core Set of Cycling Genes, Genome Biology 2007, 8:R146.
  (Also accepted by ISMB 2008 Highlights Track)
  [ pdf | http | supplements | supporting website ]
  
  
• Y. Lu, R. Rosenfeld and Z. Bar-Joseph,
  Identifying Cycling Genes by Combining Sequence Homology and Expression Data, Bioinformatics, 22(14):e314-322, 2006.
  Presented at The Fourteenth International Conference on Intelligence Systems for Molecular Biology, (ISMB 2006, Aug 7-10, Fortaleza, Brazil).
  [ bib | .pdf | http ]
  
  

Teaching

• TA for Machine Learning (10-601), Fall 2007.
• TA for Formal Languages, Automata, and Computation (15-453), Spring 2008.

This page was last modified on Thu, May 08, 2008, 13:44:00 EDT