function [A,phi,fval] = gamlip(m,n,h) global C C = zeros(m,1); C(2)=1; % searching over A and gam nn = 3; global nstate lenseq nstate = m; lenseq = n; T = n-1; adim = m^2*T; fdim = m^nn; xdim = adim + fdim; % box constraints %LB = zeros(adim,1)+1e-10; %UB = ones(adim,1); LB = zeros(xdim,1)+1e-10; LB(adim+1:end) = LB(adim+1:end) - Inf; % no box constraints on phi UB = ones(xdim,1); UB(adim+1:end) = UB(adim+1:end) + Inf; % no box constraints on phi % normalization constraints Aeq = zeros(m*T,xdim); for i=1:m*T for j=1:m Aeq(i,m*(i-1)+j) = 1; end end Beq = ones(m*T,1); % stricture constraints SIGNS = 2*list_all_ind(repmat([2],[1 m]))-3; Aina = zeros(size(SIGNS,1)*m*(m-1)/2*T,m^2*T); rind = 0; %ii1 = 1; %ii2 = setdiff([1:m],ii1); for t=1:T for i1=1:m for i2=i1+1:m for s = 1:size(SIGNS,1) rind = rind+1; ss = SIGNS(s,:); for j=1:m ind1 = coord2ind([j i1 t],[m m T]); ind2 = coord2ind([j i2 t],[m m T]); Aina(rind,ind1) = ss(j); Aina(rind,ind2) = -ss(j); end end end end end Bina = ones(size(Aina,1),1)*h*2; d=1; Ainf = zeros(0,m^nn); Binf = zeros(0,1); mn = repmat([m],[1 nn]); rind = 0; for ind1 = 1:m^nn for ind2 = ind1+1:m^nn x = ind2coord(ind1,mn); y = ind2coord(ind2,mn); if length(find(x~=y))==1 % Hamming dist == 1 for s = [-1,1] rind = rind+1; Ainf(rind,ind1) = s; Ainf(rind,ind2) = -s; Binf(rind,1) = d; end end end end Ain = assembleblock({Aina,Ainf}); Bin = [Bina;Binf]; A0 = pnormdim(ones(m,m,T),1); A0 = A0+randn(size(A0))*1e-2; A0 = pnormdim(A0,1); global FN FN = randFN(m,nn,d,'not'); phi0 = FN{nn}; x0 = [A0(:); phi0(:)]; [x,fval] = fmincon(@myobjm1,x0,Ain,Bin,Aeq,Beq,LB,UB); fval = sqrt(abs(fval)); global A FN A = reshape(x(1:adim),[m m T]); phi = reshape(x(adim+1:end),[1 m^nn]); FN{end} = phi; %gam1 = gamma(n,[1]); %gam2 = gamma(n,[2]); %fval = max(abs(gam1-gam2)); %fval = abs(max(gam1)-min(gam1)); return function y = myobjm(x) global nstate lenseq global FN nn = length(FN); m = nstate; n = lenseq; T = n-1; adim = m^2*T; fdim = m^n; xdim = adim + fdim; global A %A = reshape(x,[m m T]); A = reshape(x(1:adim),[m m T]); FN{n} = reshape(x(adim+1:end),[1 m^nn]); %gam1 = gamma(n,[1]) %gam2 = gamma(n,[2]) %s = sum(abs(gam1-gam2)); %s = sum(abs(gam1(1:end-1)-gam1(2:end))); GG = []; for k=1:m gam = gamma(n-1,[k]); GG = [GG; gam']; end % GG(k,k') % summing across k' s = strict(GG); %s = max(abs(sum(GG'))); y = -s^2; return function y = myobjm1(x) global nstate lenseq global FN nn = length(FN); m = nstate; n = lenseq; T = n-1; adim = m^2*T; fdim = m^n; xdim = adim + fdim; global A %A = reshape(x,[m m T]); A = reshape(x(1:adim),[m m T]); FN{n} = reshape(x(adim+1:end),[1 m^nn]); GG = []; for k=1:m gam = gamma(n,[k]); GG = [GG; gam']; end % GG(k,k') % summing across k' a = A(:,:,T); s = sum(sum(a.*GG)); y = -s^2; return function r = F(x) %r = length(find(x~=1)); %return global nstate lenseq = length(x); global FN FF = FN{lenseq}; ind = coord2ind(x,(repmat(nstate,1,lenseq))); r = FF(ind); return function p = p_0(x) global C p = C(x); return function p = p_n(i,j,n) % primitive cond prob global A if i p = A(i,j,n); else p = 1; end return function gam = gamma(n,x) %global nstate global A [m,m,t] = size(A); nstate = m; gam = zeros(nstate,1); if (n==2) for k=1:nstate for x1=1:nstate gam(k) = gam(k) + p_0(x1)*(p_n(k ,1 ,1)*F([1 k x]) - p_n(k ,x1,1)*F([x1 k x])); end end else for k=1:nstate gamkx = gamma(n-1,[k x]); for k1=1:nstate gam(k) = gam(k) + p_n(k,k1,n-1) * gamkx(k1); end end end return