allele_results: Frequently-asked questions
I have used "allele_view" to edit some genotypes. Do I need to call
"allele_results" to generate the new results files?
[4/21/97]
As long as you have saved your edits in "allele_view", the results
files have been updated for you. You don't have to call
"allele_results" again.
I'd like to have the results file output the noise genotypes, so I set
"Output_noise_genos" to yes. Do I need to re-run "allele_call" before
I run "allele_results"?
[4/21/97]
- If your "Analyze_noisy_data" was "no", then you should set it to yes and
re-run "allele_call" again to genotype those noisy data. Since
"allele_call" will generate the results file, you don't have to call
"allele_results" again.
- If your "Analyze_noisy_data" was "yes", then you can simply call
"allele_results" to generate new results files for you.
How do I collate the genotyping results of different panels
running on different gels into one results file, sorted by markers?
[5/14/97]
You can set up a new study which has all the gels that you want
to have the genotyping results collated into a single results file.
These gels need not run the same panel, and they could have been
independently analyzed in different studies previously. To generate
the desired collated results file, simply invoke "allele_results" on
this overall study:
Step 1: >> setup study OVERALL_STUDY
Step 2: a. In OVERALL_STUDY's "settings", set "sort_by_markers";
b. In OVERALL_STUDY's "layout", include all the gels of interest.
Step 3: >> allele_results OVERALL_STUDY
The file OVERALL_STUDY.results will contain the desired collated
genotypes from all gels, sorted by markers.
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