SELECTED PUBLICATIONS
Computational Biology
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Reconciliation with Non-Binary Species Trees
B. Vernot, M. Stolzer, A. Goldman, D. Durand. 2007. In Computational Systems Bioinformatics: CSB2007 Conference Proceedings, Imperial College Press: 441-452
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Domain Architecture Comparison for Multidomain Homology
Identification
N. Song, R.D. Sedgewick and D. Durand, 2007. Journal of Computational Biology, 14(4): 496-516.
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Two plus two does not equal three: Statistical Tests for Multiple
Genome Comparison
N. Raghupathy, R. Hoberman and D. Durand, 2007. In ``Proceedings of the 5th Asia-Pacific Bioinformatics Conference,'' D. Sankoff, L. Wang and F. Chin, eds. Advances in Bioinformatics and Computational Biology, Vol.~5, Imperial College Press, pp.215-225.
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Diagnosing
duplications: can it be done?
D. Durand and R. Hoberman, 2006. Trends in Genetics, Mar;22(3):156-64.
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A Hybrid Micro-Macroevolutionary Approach to Gene Tree
Reconstruction.
D. Durand, B. V. Halldorsson, B. Vernot, 2006. Journal of Computational Biology, 13 (2): 320-335.
A preliminary version appeared in Recomb 2005, LNBI 3500, Springer Verlag, 250-264.
Notung 2.0
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Graph Theoretical Insights into Evolution of Multidomain Proteins
T. Przytycka, G. B. Davis, N. Song and D. Durand, 2006. Journal of Computational Biology, 13 (2): 351-363.
A preliminary version appeared in Recomb 2005, LNBI 3500, Springer Verlag, 311-325.
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The Statistical Analysis of Spatially Clustered Genes under
the Maximum Gap Criterion
R. Hoberman, D. Sankoff and D. Durand, 2005. Journal of Computational Biology, 12(8): 1081-1100.
Link
to Mathematica code.
- Tests for Gene Clustering. D. Durand and D. Sankoff, 2003. Journal of Computational Biology, 10 (3/4): 453-482.
- Vertebrate evolution: doubling and shuffling with a full deck. D. Durand, 2003. Trends in Genetics, Jan;19(1):2-5.
Parallel Computation
- Parallel I/O Scheduling using Randomized, Distributed Edge Coloring Algorithms D. Durand, R. Jain and D. Tseytlin, 2003. Journal of Parallel and Distributed Computing 63 (6), p. 611-618
- Trading Accuracy for Speed in Parallel Simulated Annealing Algorithms ; D. Durand and Steve R. White, 2000. Parallel Computing 26, p. 135-150
- Load Balancing Performance of Dynamic Scheduling on NUMA Multiprocessors D. Durand, T. Montaut, L. Kervella and W. Jalby, 1996. IEEE Transactions on Parallel and Distributed Systems, p. 1201-1214
