03-327/727 Bioinformatics Resources

[Multipurpose software packages] [Multiple Sequence Alignment] [Species trees] [MSA editors] [Motif finders] [General resources]

This year, we will use

Topali can also be used for tree reconstruction and all three packages will present multiple alignments visually. All of these software packages are free, publically available, and run on Windows, Mac OS X, and Linux. In addition, a number of other resources are listed below that will also perform one or more of these tasks.

Multipurpose Phylogenetic Software Packages

Multiple Sequence Alignment

Tree visualization tools

Online Taxonomic resources

Multiple Alignment Editors

Motif based sequence analysis tools

General Resources

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Last modified: November 2, 2011. Maintained by Dannie Durand (durand@cs.cmu.edu).