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Sequence Similarity Network Reveals Common Ancestry of Multidomain
Proteins
N. Song, J. Joseph, G. B. Davis, D. Durand, PLoS Comp. Biol., May 16, 2008.
Neighborhood
Correlation website
A Hybrid Micro-Macroevolutionary Approach to Gene Tree
Reconstruction.
D. Durand, B. V. Halldorsson, B. Vernot,
2005.
Journal of Computational Biology, 13 (2): 320-335.
A preliminary version appeared in Recomb 2005, LNBI 3500, Springer
Verlag, 250-264.
Notung 2.0
The Statistical Analysis of Spatially Clustered Genes under
the Maximum Gap Criterion
R. Hoberman,
D. Sankoff and D. Durand, 2005. Journal of Computational
Biology, 12(8): 1081-1100.
Link
to Mathematica code.
Individual gene cluster statistics in noisy maps
N. Raghupathy and D. Durand, 2005. RECOMB Workshop on
Comparative Genomics,
McLysaght and Huson, Eds., Lecture Notes in
Bioinformatics vol. 3678, Springer-Verlag, pp. 106-120.
Link
to Mathematica code.
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