Christopher James Langmead

Assistant Professor, Department of Computer Science

Email: my initials at cs.cmu.edu

School of Computer Science
Computer Science Department
Carnegie Mellon University

5000 Forbes Avenue
Pittsburgh, PA  15213

Other Affiliations
Faculty, Ray and Stephanie Lane Center for Computational Biology
Faculty, Joint CMU-Pitt Ph.D. Program in Computational Biology
Courtesy Appointment, Department of Biological Sciences
Adjunct Faculty, Department of Computational Biology, University of Pittsburgh

 

Office: 7215 Gates-Hillman
Phone: (412) 268 7571
Fax: (412) 268 5576

 

Office Hours: Fall 2009: Thursdays 1:30-2:30, or make an appointment

 

Recent Papers and Abstracts:  
1. “Parameter Synthesis in Nonlinear Dynamical Systems: Application to Systems Biology”, RECOMB 2009
2.  “An Online Approach for Mining Collective Behaviors from Molecular Dynamics Simulations”, RECOMB 2009
3. “A Bayesian Approach to Protein Model Quality Assessment”, ICML 2009
4. “Symbolic Approaches to Finding Control Strategies in Boolean Networks”, J. Bioinformatics and Computational. Biology, 2009
5. “Multiplex Serum Marker Panel Accurately Predicts Systematic Complications in Acute Pancreatitis”, Gastroenterology, 2009
6. “Generalized Queries and Bayesian Statistical Model Checking in Dynamic Bayesian Networks: Application to Personalized Medicine”, CSB 2009
7. “Modeling and Inference of Sequence-Structure Specificity”, CSB 2009

      8. “A Bayesian Approach to Model Checking Biological Systems”, CMSB 2009

      9. “A Graphical Model Approach for Predicting Free Energies of Association for Protein-Protein Interactions Under Backbone and Side-chain Flexibility”, ISMB 2009

    10. “Protein Flexibility and Energy Flow During Enzyme Catalysis”, Computers in Chemistry, 2009

    11. “Identifying Allosteric Mechanisms via Belief Propagation”, RECOMB 2009

    12. “Incorporating Protein Flexibility in Predicting Free Energies of Association for Protein-Protein Interactions”, RECOMB 2009

    13. “Conserved Protein Flexibility and Pathways of Energy Flow in Enzyme Catalysis”, Biophysical Journal, 2009

    14. “Identifying Allosteric Mechanisms via Message Passing”, Keystone Symposia on Protein Dynamics, Allostery,and Function 2009

    15. “A Graphical Model Approach for Predicting Free Energies of Association for Protein-Protein Interactions Under Backbone and Side-chain Flexibility”, 3DSIG 2009* Winner Best Contribution

    16.“Protein flexibility and energy flow during enzyme catalysis”, Keystone Symposia on Protein Dynamics, Allostery,and Function 2009

    17. “Identifying Energy Coupled Networks of Residues Mediating Allosteric Communication in Protiens”, Keystone Symposia on Protein Dynamics, Allostery,and Function 2009

    18. “Angiopoietin-2, a regulator of vascular permeability in inflammation is elevated in severe acute pancreatitis and is associated with systemic organ failure in patients from Pittsburgh, PA and Griefswald, Germany”, EPC 2009   

    19. “Dynamic Invariants in Protein Folding Pathways Revealed by Tensor Analysis”, CSB 2009   

    20. “Belief Propagation Reveals Allosteric Mechanisms in Proteins”, CSB 2009   

 

 

 “Putting money in Prosper at this point would be like continuing to invest with Bernie Madoff” – quote from ccat 5/3/09 on Prospers.org