The Computational Structural Biology Group at CMU     

Current Projects

Probabilistic Graphical Models for Structural Biology

 (Hetu Kamisetty, Narges Sharif Razavian, Subhodeep Moitra)

Advanced  Algorithms for Analyzing Molecular Dynamics Simulation Trajectories

(Narges Sharif Razavian, Subhodeep Moitra)

Formal Verification of Protein Folding Pathways

(Chris Langmead)

 Software

Python Tensor Library, including an implementation of Dynamic Tensor Analysis

GOBLIN A framework for molecular modeling based on probabilistic graphical models

Members

Chris Langmead

Hetu Kamisetty, Ph.D. candidate, CSD

Arvind Ramanathan, Ph.D. candidate, Joint CMU-Pitt Ph.D. Program in Computational Biology

Narges Sharif Razavian, Ph.D. candidate, LTI

Subhodeep Moitra, M.S. candidate, LTI

Alumni

Dr. Arvind Ramanathan. Presently at Oak Ridge National Labs

K. Arun, Ph.D. Biological Sciences

Ruben Valas (B.S., Computer Science). Presently a graduate student at UCSD

Ka-Young An,  (M.S., Biology).  Presently a Ph.D. student in the joint Ph.D. program in Biomedical Engineering and Bioinformatics at the New Jersey Institute of Technology/University of Medicine and Dentistry of New Jersey

Tal Blum (M.S. LTI)

Aly Azeem Khan  (M.S. Biology). Presently a Ph.D. student a Columbia

Publications

here

Software

Coming soon!