----------------------------------------------- This directory contains the supplementary files for paper: Yanjun Qi[1]1, Harpreet K. Dhiman2, Neil Bhola3, Ivan Budyak4, Siddhartha Kar5, David Man2, Arpana Dutta2, Kalyan Tirupula2, Brian I. Carr5, Jennifer Grandis3, Ziv Bar-Joseph1§ and Judith Klein-Seetharaman1,2,4§Systematic prediction of human membrane receptor interactions, PROTEOMICS (2009) (In Press) Supplementary Information see: http://www.cs.cmu.edu/~qyj/HMRI/ ----------------------------------------------- HPPIPM is the name of a software aiming for predicting human protein-protein intearctions by integrating multiple biological data sources based on "Random Forest" classifier. It provides a java based GUI interface and perl based interface from command line. Human membrane receptor interactome is provided as a test case for this software. ----------------------------------------------- ---------------------------------------------- How to use: tar -xvf HPPIPM.tar then install it based on the manual: HPPIPM.manual.online.pdf ---------------------------------------------- How to run: $cd ***/HPPIPM/humanTaskPpi-V2-JavaWrap07-Release/ $java -jar humanTaskPpi07.jar OR to run $cd ***/HPPIPM/HumanValidate-perl06/ $Perl Batch_PrePartAlHum_HprdRecptTrain.pl interested_genelist