This directory contains the supplementary files for paper: Yanjun Qi[1]1, Harpreet K. Dhiman2, Neil Bhola3, Ivan Budyak4, Siddhartha Kar5, David Man2, Arpana Dutta2, Kalyan Tirupula2, Brian I. Carr5, Jennifer Grandis3, Ziv Bar-Joseph1§ and Judith Klein-Seetharaman1,2,4§ Systematic prediction of human membrane receptor interactions, PROTEOMICS (2009) (In Press) Supplementary Information see: http://www.cs.cmu.edu/~qyj/HMRI/ ----------------------------------------------- ----------------------------------------------- Dir: ./modules-cutoff2.0 With the cutoff 2.0, we derive a predicted human membrane receptor graph. ----------------------------------------------- File: score2.0.receptorProtein.E1.ISA.bicluster.all.txt Biclustering was performed on this graph to detect modules. This file contains the modules derived from the above precedure. ----------------------------------------------- Subdir: ./subgraphsHMRI4Cytoscape Subgraphs of the predicted HMRI graph using cutoff 2.0. For example, file: score2.0o.ReceptProtein.E1.cytoscape.share.edgeAttrs With the cutoff 2.0, we derive a predicted human membrane receptor graph. You can use this file directly in Cytoscape for visualization. ----------------------------------------------- Subdir: ./hubs Various kinds of hub protein list in this HMRI graph