
		         Installation Guide

			    July 1, 1992

	    Institute for New Generation Computer Technology


1. Introduction

 This document describes installation procedures for Experimental
Sequence Analisys System.

2. Installation

 You must install the released files on a directory,
adjust the full path name of the data files
written in the source files to the directory and compile them
with package name 'dna'.

1) Install files

 Install the released files on an appropriate directory.
There are the following files included.

    README                   To be read first (in English)
    README.j                 To be read first (in Japanese)
    INSTALL                  Installation guide (in English)
    INSTALL.j                Installation guide (in Japanese)
    OPERATE                  Operation manual (in English)
    OPERATE.j                Operation manual (in Japanese)

    esp>                     Directory for ESP programs

    esp>comm.esp        -+
    esp>dl_main.esp      |            
    esp>dlgraph.esp      |
    esp>draw.esp         |
    esp>gademo.esp       |
    esp>graph.esp        |
    esp>henkan.esp       |
    esp>ifconv.esp       |
    esp>mn_main.esp      |
    esp>param.esp        +-- Source files written in ESP
    esp>protein.esp      |
    esp>pseudo.esp       |
    esp>read_pdb.esp     |
    esp>read_pir.esp     |
    esp>rule_main.esp    |
    esp>rulew.esp        |
    esp>sequence.esp     |
    esp>structure.esp    |
    esp>warn.esp        -+

    kl1>                     Directory for KL1 programs

    kl1>cmpfiles             Used for compiling KL1 programs
    kl1>relinkfile           Used for relinking KL1 programs
    kl1>unloadfile           Used for unloading KL1 programs
    kl1>dl.kl1          -+
    kl1>eval.kl1         |            
    kl1>exchan.kl1       |
    kl1>ga.kl1           |
    kl1>library.kl1      |
    kl1>log.kl1          |
    kl1>main.kl1         |
    kl1>operate.kl1      |
    kl1>peserv.kl1       +-- Source files written in KL1
    kl1>print.kl1        |
    kl1>protoc.kl1       |
    kl1>random.kl1       |
    kl1>report.kl1       |
    kl1>select.kl1       |
    kl1>sga.kl1          |
    kl1>statist.kl1      |
    kl1>table.kl1       -+

    data>                    Directory for data

    data>ccdata              Patterns in amino acid sequences
    data>ccpatt              Patterns used for the motif extraction
    data>dat1.pdb            Three dimensional structure data of proteins
    data>seq.pir             Amino acid sequences

2) Adjust path names in the source files

 The full path names are written in the following source files.
You must adjust them to the directory on which you have installed files.

    >sys>user>demo>DNA>data>dat1.pdb  in the file  esp>read_pdb.esp
    >sys>user>demo>DNA>data>seq.pir   in the file  esp>read_pir.esp
    >sys>user>demo>DNA>data>ccdata    in the file  kl1>main.kl1
    >sys>user>demo>DNA>data>ccpatt    in the file  kl1>main.kl1

3) Catalogue ESP programs

 Set package name to 'dna' and catalogue ESP source files under
the 'esp' directory using 'librarian'.

4) Compile KL1 programs

 Set package name to 'dna' and execute the following command
under the 'kl1' directory.

     take(cmpfiles)

5) Start up the system

  Execute the following command in the simpos debugger.
 
      :demo(#demo). 

After a new window is opened, execute the following command
in the pimos listener.

      ga:go.

Then the system is started.




