Multiple Sequence Alignment by Parallel Iterative Aligner(KL1)

1)Environment

Machine : PIM model-m or Multi-PSI

ProcessingElements : 256 or 64

If you use this program with less than 10 Sequences,
you can use this program with 64ProcessingElements.
But if you use this program with more than 11 Sequences,
you must use this program with 256ProcessingElements.

SIMPOS  :Version 8.1(PSI2)
SIMPOS3 :Version 8.2(PSIUX)

PIMOS   :PIMOS/ CAL/ CSP/   KL1/   KL0/ParaG
Version   0000/0000/0117/023500/000000/3200

PIM/m-CSP Version 01.17


2)How to Install

1.Translation of SourceFiles
  Please copy the program files (./src/*) into the same directory
  on the SIMPOS file system.


(Parallel Iterative Aligner)

2.Loading of KL1 programs
  Please load all KL1 programs on "listener"(PIMOS).
  Please put command ( [1] take"load.pia". ) on "listener"(PIMOS). 

3.Compiling of KL1 programs
  If you need compile again, please put command 
  ( [1] take"compile.pia". ) on "listener"(PIMOS). 
  If you need unload, please put command 
  ( [1] take"unload.pia". ) on "listener"(PIMOS). 


(Tree_Base Parallel Iterative Aligner)

2.Loading of KL1 programs
  Please load all KL1 programs on "listener"(PIMOS).
  Please put command ( [1] take"load.tpia". ) on "listener"(PIMOS). 

3.Compiling of KL1 programs
  If you need compile again, please put command 
  ( [1] take"compile.tpia". ) on "listener"(PIMOS). 
  If you need unload, please put command 
  ( [1] take"unload.tpia". ) on "listener"(PIMOS). 


3)How to use

Examples on "listener"(PIMOS)


(Parallel Iterative Aligner)

Please see DOC.pia


(Tree_Base Parallel Iterative Aligner)

Please see DOC.tpia


