Operation of SA program

1) Logging into PIMOS
   On System Menu, click "pimos login",
	Enter FEP node name -----> ***** [RETURN]
   	Enter your PIMOS user name ----> ***** [RETURN]
   	Enter your PIMOS password -----> *****[RETURN]
   then,"Shell" appears.

2) Setting up
   In Listener,
	?- take("setup.com"). [RETURN]

3) Demonstration
   After doing garbage collection by,

	?- gc. [RETURN]
   Execution by,
	sa. [RETURN]

   In Left Window appeared,

	START> [RETURN]

   and execution will start.

    interruption can be done by, input "CTRL-C" and 'a' [RETURN] on Listener.

Notes:

1: Changing  data or parameter:
	Rewrite the data in input.kl1, compile and relink it with
	other programs.

   Example:
        on listener,
            ?- compile.
            compile> input
            compile> !exit
            relink([align_io,cp,data,dayhoff,energy,exp_new,input,io,sa]).
            unload([align_io,cp,data,dayhoff,energy,exp_new,input,io,sa],
		"NAME.exe").


2: How to rewrite input.kl1
   DATA : get_seq/2  
                NameList = [Name1,Name2,.....]
                SeqList = ["----abcdefg---hijklmn---",
                           "----abcdefg---hijklmn---",
                           "----abcdefg---hijklmn---",.....]
           get_display_param/3
                Column Num = Y     ( Y : the number of sequences)       
    Sequence Display : get_display_param/3
                MaxLength = Z * X  ( X : the number of display window )
                Column Num = Y     ( Y : the nunmber of sequences)
                Orikaeshi = Z      ( Z : the number of characters in one
			 display window)

   Continuous GAP : param_energy/6
                P
                Q
                S
                U
                V
                W
   Default Execution : get_exec_param/3
                Pmax
                LOOP
                EXNum

   Temperature List : get_templist/1
                TempList = [ Temp1,Temp2,......,Temp63]    (maximun : 63 temperatures)
   
    Initial Monitor Temp : get_montemp/1
                MonTemp = Tempi (1 =< i =< 63)

    Energy :get_num/1
                Num :  To multiply "Num" to the original value of energy.

