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%	Multiple Sequence Alignment by 3-dimensional Dynamic Programming  %
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%	 	1992.7 Check and refine every program 			  %
%		for IFS (ICOT Free Software) release.			  %
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%	(C)1992 Institute for New Generation Computer Technology 	  %
% 	(Read COPYRIGHT for detail information.) 			  %
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README$B!J(BEnglish Version$B!K(B

1:Abstract

Dynamic programming is the most popular algorithm for Multiple
Sequence Alignment. This program executes the three dimensional
dynamic programming to align three sequences in parallel rapidly.

2:Environment

	Machine : PIM/m or Multi-PSI $B!J(B64PE$B!K(B
	SIMPOS  : Version A20 (PSI/UX) 
	PIMOS   : PIMOS/ CAL/ CSP/   KL1/   KL0/ParaG
	Version	   3400/0192/0103/014800/001500/3200

3:Files

FILE               | MODULE NAME |            FUNCTION  
-------------------|-------------|--------------------------------------------
dp_color.kl1       | dp          | user intefaces for color display 
-------------------|-------------|--------------------------------------------
makeGrid.kl1       | makeGrid    | make grid 
P1.kl1             | p1          | node process definition 1
P1_SUB.kl1         | p1_sub      | p1's sub predicates.
P2.kl1             | p2          | node process definition 2
-------------------|-------------|--------------------------------------------
P2_SUB.kl1         | p2_sub      | p2's sub predicates.
-------------------|-------------|---------------------------------------------
Dayhoff.kl1        | cost        | Dayhoff's mutation table
-------------------|-------------|--------------------------------------------
inputTDN.kl1       | input       | TDN motif sequence data 
-------------------|-------------|--------------------------------------------
dna3d.esp          |  ---        | display colored sequences using string-io
                   |             |  device used only when dp_color.kl1 is used.
-------------------|-------------|--------------------------------------------

EXECUTION FILES

FILE            |  LINK FILES          |   NOTES
                |                      |   
----------------|----------------------|-------------------------------
DEMO_TDN.exe    |  dp_color.kl1        |
                |  makeGrid.kl1        |
                |  P1.kl1              |
                |  P1_SUB.kl1          |
                |  P2.kl1              |
                |  P2_SUB.kl1          |
                |  DayHoffTable.kl1    |
                |  inputTDN.kl1        |
----------------|----------------------|-------------------------------
4:Install
	Please copy Files.
	On SIMPOS,catalogue ESP program, and save it.
	Read INSTALL in this directory for further information.

5:Demonstration
	On PIMOS, take setup.com.
	In listener,
		?- dp.[return]
	appearing left window,
		input [return] twice.
	Read DEMO for further information.

