Bing Liu

Research Assistant Professor
Computational & Systems Biology Department
School of Medicine, University of Pittsburgh

Address: BST3 3085, 3501 Fifth Ave, Pittsburgh, PA 15213
Phone: (412) 648-7775
Email: liubing[AT]cs.cmu.edu

About


I received PhD in Computational Systems Biology under the supervision of Profs P.S. Thiagarajan and David Hsu in NUS Graduate School for Integrative Sciences and Engineering, National University of Singapore. Previously, I have been working with Prof Edmund M. Clarke (Turing Award 2007) as a Postdoctoral Fellow in Department of Computer Science, Carnegie Mellon University, and with Prof Ivet Bahar as a Research Associate in the Department of Computational & Systems Biology, School of Medicine, University of Pittsburgh. Currently, I am Research Assistant Professor in the Department of Computational & Systems Biology, School of Medicine, University of Pittsburgh. [CV]


Research


My research area centers on computational systems biology. I develop computational modeling, simulation and analysis techniques to study the dynamics of biological systems. As an integral part of my research, I collaborate with a number of biologists and clinicians to study a variety of crucial biological processes related to human immunity and cancer. I also leverage high-performance computing, formal verification, and machine learning techniques to enable the analysis of multi-scale multi-cellular systems. Furthermore, I am applying the techniques I have been developing to analyze cyber-physical systems that are ubiquitous in safety-critical applications. [More]

Publications

In Preparation

Conference Abstracts/Posters

Book

Theses

Software

PADA: a PAthway Dynamics Approximator, which can approximate the dynamics of ODE-based biopathway models using dynamic Bayesian networks. It supports System Biology Mark-up Language (SBML) format and multiple platforms.

PADA-GPU: a GPU-based implementation of PADA. It supports the NIVIDA Tesla 2.0 (Fermi) platform.

SLIME: a Stored and LIve Media Editor written in Tcl/Tk.

Talks

Professional Services

Editorial Board Member:
Computers in Biology and Medicine
Journal of Bioinformatics, Computational and Systems Biology
Austin Journal of Lung Cancer Research

Conference Program Committee Member/Organizer :
IEEE International Conference on Bioinformatics and Biomedicine (BIBM'16) - FMBBS Workshop, Shenzhen, China, 2016.
The 14th conference on Computational Methods in Systems Biology (CMSB'16), University of Cambridge, UK, 2016.
The 11th International Conference on Artificial Intelligence Applications and Innovations (AIAI'15), Bayonne/Biarritz, France, 2015.
Workshop on Signal Processing, Image Processing and Pattern Recognition (SIPR'15), Kochi, India, 2015
The 3rd NUS-U.Tokyo Joint Workshop on Computational Systems Biology, Singapore, 2011.
The 2nd NGS Student Symposium, Singapore, 2009.
The 1st NUS-U.Tokyo Joint Workshop on Computational Systems Biology, Singapore, 2008.

Reviewer of Journals:
Bioinformatics
Nature Scientific Reports
PLoS One
BMC Systems Biology
Chaos: An Interdisciplinary Journal of Nonlinear Science
Journal of Theoretical Biology
BioSystems
Mathematical Biosciences
Computers in Biology and Medicine
Journal of Bioinformatics and Computational Biology
Theoretical Computer Science
International Journal of Biomedical Science
ACM Transactions on Modeling and Computer Simulation
LNCS Transactions on Petri Nets and Other Models of Concurrency
International Journal on Software Tools for Technology Transfer
Journal of Clinical Diagnosis and Research
American Journal of Medical and Biological Research
Austin Journal of Proteomics, Bioinformatics & Genomics

Reviewer of Conference Proceedings:
ACM Conference on Bioinformatics, Computational Biology and Biomedicine (ACM-BCB)
International Conference on Computational Methods in Systems Biology (CMSB)
International Conference on Computer Aided Verification (CAV)
ACM/IEEE Symposium on Logic in Computer Science (LICS)
International Symposium on Automated Technology for Verification and Analysis (ATVA)
International Workshop on Biological Processes and Petri Nets (BioPPN)
International Conference on Genome Informatics (GIW)
International Conference on Artificial Intelligence Applications and Innovations (AIAI)
International Conference on Biomedical Engineering and Biotechnology (ICBEB)
International Conference on Systems Biology (ISB)
Translational Bioinformatics Conference (TSB)


Education


Misc


My Erdös number is 4.

              ➚ David Hsu    ➙     Rajeev Motwani   ➙   Yoshiharu Kohayakawa ➘
Bing Liu ➙ Edmund M. Clarke ➙ Robert P. Kurshan ➙ Andrew M. Odlyzko ➙ Paul Erdös
              ➘ P.S. Thiagarajan   ➙   Rohit J. Parikh   ➙   Melvyn B. Nathanson ➚

Page last modified on April 1, 2016, at 10:20 AM